Sinc023453.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071636.1:471367-476654[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.1e-05 0.0067 18.3 0.2 1 21 108 128 108 129 0.97 2 15 4.9 8.1e+02 2.3 0.4 2 23 134 154 133 154 0.79 3 15 0.12 19 7.4 0.7 1 21 159 179 159 180 0.95 4 15 5.1 8.4e+02 2.2 1.9 1 23 187 210 187 210 0.90 5 15 0.032 5.2 9.1 4.9 3 21 215 233 214 234 0.94 6 15 0.00012 0.019 16.8 2.5 1 23 245 268 245 268 0.95 7 15 8.2e-05 0.013 17.3 0.5 1 23 274 296 274 296 0.93 8 15 0.00033 0.055 15.4 2.3 1 23 303 325 303 325 0.98 9 15 0.0023 0.38 12.7 0.1 1 21 463 483 463 484 0.93 10 15 0.0093 1.5 10.8 2.0 1 21 514 534 514 535 0.95 11 15 3.7e-05 0.006 18.4 1.7 1 23 542 565 542 565 0.97 12 15 0.02 3.2 9.8 6.1 2 21 569 588 568 589 0.93 13 15 8.4e-05 0.014 17.3 1.4 1 23 600 623 600 623 0.97 14 15 5.5e-06 0.0009 21.0 1.6 1 19 629 647 629 651 0.94 15 15 4.5e-05 0.0074 18.1 0.9 1 23 658 680 658 680 0.98
Sequence Information
- Coding Sequence
- ATGGAGATATCGTCTACACTCCCGGTGATGGTCTGCTCGGAGTGCGTTACTGCCACCTTGGAATCGGCCCCCTTCGTACTGCGATGTCGGGACTCTTGCCGTAAATGGACACATTTATCTGATTACCTCTCAAATTTACAAGAAACCGCACCCGACTTCACGAGAGCTATGTGCATCCTTGTAGGAGAAGACTATATCAATACAATTCCAATAGCCAGCACAATTGAAACTGTAAGAAAAGCCTATAAATTCATCAGTAACCCAAGGAAAAGAAGAAACGCAGATTTAATGAAAGATTCGTGCCTCCCCAAAATTACCAAATTCGAATGTCCAGAATGTCAGCAAGAATTTCGAGGATTGTACAATTTGAACAAACATTTGAGAGATATCGGTACTCAAATGTGCCAATATTGCGGGATGGTTCTGAATTTCAACGCGTTCccgaaacatttaaaaatgcatGGAAAACCTGAATTTACGTGTGACAATTGCCAGgatctatttaaaaatgaaacaaattatcTGAAGCACCTTAAGGTCTGCAAAAGGAAAGGTTCGCATGTTTGCATCGAATGTTCTATGAGATTCCTCACAGCAGCTAACTTGGTCACTCACCACTCGTCCAAGCACATGCAAATACTGTGCAGTGGTTGCCGTAAGAGCTTCAAGAGTAAGGTCTGTTTTAAGAACCACAAAAAGCGCTGTTTTAATTCTGAAAACTtgtatgctacattcatatgtGACTATTGCGGGAAGGAGTACAATAAAAAGACAACCTTACGATTACACATACAGCATATGCACCTTATTGGCTGGTCATTCCAATGTGCTCAATGTGGCAAGAAGTTCGCAAGCCAGGCCACTTTGACCGAGCACGATAACACACACAACCCCGTCGAAGACAGATTCGTTTGTGATATTTGTTCAACTAAATACAGTACGAGGAGGGGTTTCTGGCGTCATTACAAGAGGCACTTCGACGAAAACGGTGAAGTCACAGTGGCTCTCAGACCGCATACGCGGACACCATACAAAAAGAAACTATACAAATGCATAATTTGTGGTTTCATGGAGATATCGTCTACCCTACCCGAGATGGTCTGCTCGGAGTGCGTTACTGCCACCTTGGAGACTGCCCCCTTCGTCCTGCGGTGTCGTGACGTATGCCAGAAATGGTCGGAAATATCTGACAACCTTTCAAATTTACAAGTATCATCAACTAAATCCACAAAAAGTTTGTGCGTTCTTATAGGTGAAAACACTATAAATACCATTCAAACTGATATCTCTACTAAAACTGTAAAAAAAGCTTACCAATTCATCAATAAATCAAAAAGATTGAAAACGGCAGACATCAGTAGTAATGAATTCATCACGGGCGCAAGATTCGAATGCCCAGAATGTGGGAAAGATTTCCCAAgagtgtttattttaaataaacacttaAAAGAAAGCGGTAAGCAAATGTGCGGGTACTGTGCGGAAATTTTGGATATCGACGTGTACCTGAAACATTTGAAGATACATGGACACACGGAATACATATGTAAAAGATGCAGAGAACCATTTAGGCATAAAGGGAAATATTTGAAACACTTAAAACTATGCAATAGGAAAGGATCTTACGTGTGCGTTGATTGCTCCCAGAGGTTCACCTCGGCTTCCAACTTGGTCACTCACCATTCGACTAAGCACAGGCAGTCCGTCTGCAAAGGGTGCAATAAAAAATTCAAGAGCAGGGCATGttttaaaaatcacaaaaaacacTGCGCGAATTCTCAAAACCTGTTTGCAAAATACATATGTGATTATTGTAAAAAGGAGTATAGTTTGAAGACGTCTCTTCGTTTACACATACGTAATTCCCACCAAGATGGGTGGGTGTACCAGTGCGCACAATGTGGCAAAAGATTCTCCAACCCAAGCCATTTGAAAGAGCACGACAACCTTCACAATCCAGTCCACGACAGATACCCATGCAGCATTTGTGAGGCTAAGTACAGCACCAGGAGAGGTTTCGAGCGTCACATGAAGAGACATGTTGACGATAAAGGTGACATTGTACCAATTGTAGCAACTAGGCCGTGCGCAGCTAAGAATACAACTAAGAAACTGTATAAATGCTTAGTTTGTCAATTTGTGAGCATTAAACACGCCATTAAGAGACATTTGAAAAATAGACACCAAAAGTTGCCGTGGGAAGTCGATGGTTCGCTAGCGTTAGTTCGATTTTGA
- Protein Sequence
- MEISSTLPVMVCSECVTATLESAPFVLRCRDSCRKWTHLSDYLSNLQETAPDFTRAMCILVGEDYINTIPIASTIETVRKAYKFISNPRKRRNADLMKDSCLPKITKFECPECQQEFRGLYNLNKHLRDIGTQMCQYCGMVLNFNAFPKHLKMHGKPEFTCDNCQDLFKNETNYLKHLKVCKRKGSHVCIECSMRFLTAANLVTHHSSKHMQILCSGCRKSFKSKVCFKNHKKRCFNSENLYATFICDYCGKEYNKKTTLRLHIQHMHLIGWSFQCAQCGKKFASQATLTEHDNTHNPVEDRFVCDICSTKYSTRRGFWRHYKRHFDENGEVTVALRPHTRTPYKKKLYKCIICGFMEISSTLPEMVCSECVTATLETAPFVLRCRDVCQKWSEISDNLSNLQVSSTKSTKSLCVLIGENTINTIQTDISTKTVKKAYQFINKSKRLKTADISSNEFITGARFECPECGKDFPRVFILNKHLKESGKQMCGYCAEILDIDVYLKHLKIHGHTEYICKRCREPFRHKGKYLKHLKLCNRKGSYVCVDCSQRFTSASNLVTHHSTKHRQSVCKGCNKKFKSRACFKNHKKHCANSQNLFAKYICDYCKKEYSLKTSLRLHIRNSHQDGWVYQCAQCGKRFSNPSHLKEHDNLHNPVHDRYPCSICEAKYSTRRGFERHMKRHVDDKGDIVPIVATRPCAAKNTTKKLYKCLVCQFVSIKHAIKRHLKNRHQKLPWEVDGSLALVRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -