Sinc009230.2
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- L
- Assembly
- GCA_036419045.1
- Location
- CM071629.1:14489550-14502414[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.54 89 5.3 5.8 1 23 63 85 63 85 0.97 2 16 5.5e-07 8.9e-05 24.2 2.7 1 23 91 113 91 113 0.99 3 16 2.2e-05 0.0037 19.1 0.1 1 23 119 141 119 141 0.98 4 16 3.2e-05 0.0052 18.6 0.1 2 23 157 179 156 179 0.96 5 16 5.2 8.5e+02 2.2 0.1 9 23 210 225 206 225 0.93 6 16 0.38 61 5.8 0.1 3 23 277 297 276 297 0.97 7 16 0.56 92 5.2 0.0 3 20 312 329 311 330 0.86 8 16 0.00026 0.042 15.7 0.6 1 23 340 363 340 363 0.94 9 16 0.0098 1.6 10.8 0.1 1 23 368 391 368 391 0.92 10 16 0.019 3 9.9 0.2 1 23 442 466 442 467 0.93 11 16 0.00017 0.028 16.3 0.1 2 23 521 542 520 542 0.96 12 16 0.05 8.2 8.5 0.0 1 23 550 572 550 572 0.98 13 16 1.6 2.6e+02 3.8 0.7 2 23 580 601 579 602 0.93 14 16 0.75 1.2e+02 4.8 0.3 1 23 676 698 676 698 0.94 15 16 0.003 0.49 12.4 0.1 1 20 706 725 706 728 0.95 16 16 0.086 14 7.8 0.4 1 23 735 757 735 757 0.94
Sequence Information
- Coding Sequence
- ATGTTATCGAGTCCGTATCGATTCGTTACACTCAATGATGCGAACAATCGCTGCGAGTTATCGATCACCGGACGTAACTCCCGCCGTTCTCTCTGGAAGACTTTGGAAATAACTATCAATGCTGTTGCTAGAGCAACGTTGAGTTGTAGTGTGTTTTATTCGCAGACGCACTCGGACCAGATGCCGTTTCGGTGCGAATTCTGCTCGCGGCTGTTCAAACACAAGCGATCACGGGATCGACACGTCAAGCTGCACACCGGAGACCGCAAGTATCGCTGTGCGCATTGTCCTGCCGCCTTTTCCAGGAGCGACCACCTGAAGATACACATGAAAACACATGACAACCAGAAGCCGTTCCAATGCACGGTGTGCAACCGCGGATACAACACGGCCGCAGCGCTGACGTCGCACATGCAGGGCCACAAGCGGGACCGCGACGGCCGCGAACCGGATCGCCGCCGGGCCCTACGGTGTCCACGCTGCGGTGACGCTTTCAGGCGCCCTGATCTATTGCAATCGCACATGATCACTGTCCACGGAGTGGAGGCAGCTGCTTTGACGCCACCACGTCGTGTCGCTTCTCAACCCCCACCTACACTGCTGGCCTGCATTTACTGCACTCGAGACACCTTTACTAGTATGGAGCAATTACAGCTGCACGTGCGAGCAGCACATTCCGCGTTACTGAACGGCGAAACTCCGATCCAGCCAGAGCAACCGACGCCAACCGATCTCAGCAGACGACCGTCGGATGAAGTCATCCCGGCGAAACGGCCTAGGTCCGGCTCTGGAACACCACAAACTACACTGTCGCCTAGTACGCTGCTTTGCAACCAATGTGATGCAGCATTACCAGACTTTGAAGCGTTTCGAAGTCATCTTAAAGGCCATCTGGAAGAGGGTGGGGAGTTAGGACGATCTAGTCCAGCGCCTTGTCTTCACTGCGGTGCCACATTTGCCGATGCTGCTGCTTCAGAGAGACATCTCGCCGCCTACTACCTAGCCGTATCTTGTGAATACACGTGCCACAGCTGCGCTAGAAGTTTCTCAGCACCAGATGATCTGCAAAAGCATCTGTTGGATCTACACGCCCATCATCTATATCGATGTTCGCTGTGCAAAGAAGTATTTGATTCTAAAGTTGCAATTCAGGTACATTTCGCGGTGGCGCACAGCGGTGAAAACAAGGTGTGGATGTGTCGTTCGTGCGGCGCGGGCGTGGGTCCGCTGCGCTCCGAGGCAGAGGGCGCGGCGCACGTACGCGCGCGACATGCGGCGTCTCGTTGCGCATGCGGTGCGCTGCCCGCCCGCCGGCCACGCGCCTTTCGCTGCCCCGCGCCCGCCTGCAGTGACACCTTTGCCGTGCAGTATCTGCTGGAGCGTCACATGCAGGCGCACCACGCCACTTCTCATCAGccaCTAAACGGCGAGTTAACGCGAGTGAAGCGATTGGAAAACAACAACGGCATTGAAGGTGTGGATGGTAACTGTTCGCCTTGTGCACCGGACGGGCCCGCGGGCGGCGAGGAGCGGCGGCGCAAGAACGGCGCGGTGGCGCTGCAGTGCGCCTATTGTGGAGAGCGCACACGCAGCCGCGCTGAGCTGGAGGCGCACACGCGCGCGCACTCTggtgccgccgccgcccgccacaAGTGCCTCATCTGCGACGAGGTCTTGCCATCCGCTGCGGTACTGGCTGAACACAAGTTGACACATTGTAAAGTGGTAGCTGGTGATACATGCGCCCGATGCCGAGCTCGATTGCCGTCCGAGGAATCTTTCTTGTCGCATATGGCACGACATCATCCTACACTACCGGCGCCTTGTGTCGTGTGCCGACAGACGTTGGCTTCTGAAGCGGAAGCGCGCCTTCATGCTCGTTTTCACTTACGGCCAGCAGAGGATGAGCAGCGATGTGCTATTTGTTTACGGGCTTTGACCGAGAGCGAAGCCGGTGAAGGGGCAAGGGCTTGTTCATCGTGCTACGCTCGCCACGCCGCGCCCCGCCCCCCGCAGCCGGCAGACCACGATTGCCGCCTTTGCAGGCGAGCTCTCGGATCCCCAACGCGTCTACAAGCTCACCTCATAGAACACACGTTTGCAGGAATAAGTGCATTTACGTGCTACCTCTGTTCAGCGGTATTCACGAGCGCAGCTGGCCTGCAGCGTCATCTGCCTGAGCACGCTACTGCACCTAAGCCTTTTGACTGTGGAAGGTGCGGCATGAAATTCTTCTTTAGAGCTGAACTAGATAACCACGCATTTGTTCACTTGGAGGAAGCAGAAATAGCTCAGCGAGCGTTTTATGAAGCATATGCGAGGGGTGCTGCTTCCGCATGGGCAGCGTTAGCGCCGCCAGAATCTGCTTCTCAGGCGATAACTGCGCCTGTAGCACCTGTTGCTGAAATCAAGCGGGAGCCAGAAATAAAAGAAGAACGTAACGATGAGTACATTGAGGTGTCTTCCCCTCCGCCGCCTCCGGCTCCAGCTGCTTCCCCTCCACCCGTAGTGAAACAAGAGAAGCCCGACGAAGACTGA
- Protein Sequence
- MLSSPYRFVTLNDANNRCELSITGRNSRRSLWKTLEITINAVARATLSCSVFYSQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCPAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRDGREPDRRRALRCPRCGDAFRRPDLLQSHMITVHGVEAAALTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETPIQPEQPTPTDLSRRPSDEVIPAKRPRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRSHLKGHLEEGGELGRSSPAPCLHCGATFADAAASERHLAAYYLAVSCEYTCHSCARSFSAPDDLQKHLLDLHAHHLYRCSLCKEVFDSKVAIQVHFAVAHSGENKVWMCRSCGAGVGPLRSEAEGAAHVRARHAASRCACGALPARRPRAFRCPAPACSDTFAVQYLLERHMQAHHATSHQPLNGELTRVKRLENNNGIEGVDGNCSPCAPDGPAGGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRARLPSEESFLSHMARHHPTLPAPCVVCRQTLASEAEARLHARFHLRPAEDEQRCAICLRALTESEAGEGARACSSCYARHAAPRPPQPADHDCRLCRRALGSPTRLQAHLIEHTFAGISAFTCYLCSAVFTSAAGLQRHLPEHATAPKPFDCGRCGMKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPESASQAITAPVAPVAEIKREPEIKEERNDEYIEVSSPPPPPAPAASPPPVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_01081822;
- 80% Identity
- -