Sinc037186.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- Znf711
- Assembly
- GCA_036419045.1
- Location
- CM071644.1:23169318-23170769[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.025 4.1 9.5 0.1 2 23 162 183 161 183 0.96 2 11 0.00032 0.052 15.5 1.9 1 23 189 212 189 212 0.98 3 11 1.6e-05 0.0027 19.5 0.4 1 23 219 241 219 241 0.98 4 11 3.3e-05 0.0055 18.5 3.8 1 23 247 269 247 269 0.98 5 11 3.8e-07 6.2e-05 24.6 0.3 1 23 275 297 275 297 0.97 6 11 0.00028 0.046 15.6 2.9 1 23 303 325 303 325 0.97 7 11 4.4e-06 0.00073 21.3 0.4 3 23 333 354 332 354 0.97 8 11 0.00028 0.045 15.6 1.1 5 23 360 378 359 378 0.89 9 11 0.00011 0.018 16.9 3.1 1 23 384 407 384 407 0.93 10 11 0.033 5.3 9.1 0.5 1 23 413 438 413 438 0.94 11 11 4e-05 0.0066 18.3 2.8 1 23 444 467 444 467 0.97
Sequence Information
- Coding Sequence
- atggaatcAAGTTTGTGCCGAGTTTGTCTTGACAATACCGCTTCGATTTCAATATTTGAAATTCATgataatattcaatattgtacaaaaataatgaaatgtgtTCATATCAATATCACAGAGGATGATGGCCTTCCCAAGTTTTTGTGCGATTGTTGTGTAAAAGAACTTGATATTTCCTATGCGTTTATAATAAAATGCGAAACTACAGAAAAAGCATTACGTCTTGTGGGTCAAATGCCAGAGCATGATGTAAAGTCAGAGATAGACATTAAAGATGAAGGTGAATTGGTGATAGATGATAGCTTCCTCAGCGATATCGAAGCTGATCAATCTTCAAACCAGGACTTTTCTGAAGAGACTCTTACTATGGAACTTACAAAGTTAGAAAGTGTTCCTATAGAATCAGACACGGAACATagggaacaaaagaaaaaaaaagggggcAAGAAAGTGAAGAAAAGGTCAGTACCTGGTTCACTGCAGTGTGTCATTTGTGCCCAATCGACTTTAAGTCGATCTGCGATGGAGGCGCATATGCGAACGCATACAGGAGAGAAACCATTTCAATGTAAAGTATGCAAATCCTGGTTTCGCACCAAGGGATCATTAAAACGTCACATAGAAACCCGACATTCAGACAGAGAACGAAAGTTTACGTGTGAAATGTGTGGCAGTAGCTTCTATAGAAAGAATGATATTATCATACATATGAGAGTACACACAGATGAACGGCCCTATCACTGTTCTTACTGCTCAAAACGTTTCCGTCAAATTGCTACATTAATCCGCCATAAACGCGTACATACTGGTGAAAAACCATATGACTGCCCTATATGTGGTAAGAAATTTTCAGACAAAGCACTTGTAAAGAAGCATCAATCAGTCCATAGTGACGAACGCAAATTTACTTGCCATTTATGTAGCAAATCTGTTAAAACTCGCAATGCATTGTCTACACATATGACATTGCATACTAATGAGAAACATAACATATGTAGTTTCTGCGGAACTGCATTTTCAATGAAAGGCAATCTCCAGACTCATATAAGAAGGGTGCACTCTGAAAAATCAGGTCAATGTTCAGTTTGTTTCAAAACTTTCTCTGATCTCCAGGTTCATATGCGTAAACACACAGGAGAAAAACCATTTGTGTGCAAACtatgtgaaaaaaattttgCAACGAAACGTAGTCTATCTCACCACATGGCTTTCaaacatgaaaatatttcaaagttcAAATGTTCTATAAGTGAATGCACAAGGACTTTCCCCACTGCAATGATGCTTGAATTTCATTTACTGAAGCAGCACACAAATAATACTCCATATATTTGCCAGCACTGTTCCCGTGGATTCTTCAGGACTAGTGATCTCTCTCGTCATTTGAGAGTAAGCCATATGGATGCCCATTTAAAAATTCCCATAGTATCAGATCCTGTTATCTTATAA
- Protein Sequence
- MESSLCRVCLDNTASISIFEIHDNIQYCTKIMKCVHINITEDDGLPKFLCDCCVKELDISYAFIIKCETTEKALRLVGQMPEHDVKSEIDIKDEGELVIDDSFLSDIEADQSSNQDFSEETLTMELTKLESVPIESDTEHREQKKKKGGKKVKKRSVPGSLQCVICAQSTLSRSAMEAHMRTHTGEKPFQCKVCKSWFRTKGSLKRHIETRHSDRERKFTCEMCGSSFYRKNDIIIHMRVHTDERPYHCSYCSKRFRQIATLIRHKRVHTGEKPYDCPICGKKFSDKALVKKHQSVHSDERKFTCHLCSKSVKTRNALSTHMTLHTNEKHNICSFCGTAFSMKGNLQTHIRRVHSEKSGQCSVCFKTFSDLQVHMRKHTGEKPFVCKLCEKNFATKRSLSHHMAFKHENISKFKCSISECTRTFPTAMMLEFHLLKQHTNNTPYICQHCSRGFFRTSDLSRHLRVSHMDAHLKIPIVSDPVIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01331932;
- 90% Identity
- -
- 80% Identity
- -