Sinc022949.2
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071635.1:20016145-20025907[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0038 0.61 12.1 1.0 3 23 294 315 293 315 0.96 2 23 0.27 43 6.3 0.3 1 22 725 746 725 746 0.95 3 23 5.2 8.5e+02 2.2 0.3 1 22 787 808 787 810 0.82 4 23 0.0056 0.92 11.5 2.1 2 21 820 839 819 840 0.94 5 23 0.12 20 7.3 0.2 3 23 849 870 847 870 0.89 6 23 0.097 16 7.6 0.1 3 23 891 912 889 912 0.96 7 23 0.00056 0.092 14.7 3.2 1 23 918 941 918 941 0.95 8 23 0.097 16 7.6 0.0 1 23 967 990 967 990 0.90 9 23 0.03 4.9 9.2 3.3 1 23 995 1017 995 1017 0.96 10 23 0.013 2.1 10.4 0.2 1 23 1023 1046 1023 1046 0.95 11 23 0.00081 0.13 14.2 1.3 1 23 1059 1081 1059 1081 0.98 12 23 0.00014 0.023 16.6 1.8 1 23 1131 1154 1131 1154 0.97 13 23 0.0053 0.86 11.6 1.8 1 23 1212 1235 1212 1235 0.96 14 23 0.00068 0.11 14.4 1.7 2 23 1261 1283 1260 1283 0.95 15 23 0.012 1.9 10.5 0.1 2 23 1289 1311 1288 1311 0.96 16 23 0.12 20 7.3 0.1 1 21 1355 1375 1355 1376 0.94 17 23 0.00096 0.16 13.9 0.6 1 23 1387 1409 1387 1409 0.93 18 23 8.4e-05 0.014 17.3 0.4 2 23 1497 1519 1496 1519 0.93 19 23 1.6e-07 2.6e-05 25.8 1.3 3 23 1526 1546 1525 1546 0.98 20 23 0.072 12 8.0 0.2 3 23 1567 1587 1566 1588 0.95 21 23 0.11 18 7.4 0.0 1 23 1610 1632 1610 1632 0.98 22 23 0.021 3.5 9.7 0.6 1 23 1638 1661 1638 1661 0.95 23 23 0.0002 0.032 16.1 0.4 1 23 1669 1692 1669 1692 0.96
Sequence Information
- Coding Sequence
- atgaaTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAAGTGAATTACTGCCGATTTTtcctaccaccagttcggatgAGTCGGATCCTCCCGTTCTGgctttaaaaataaaggatTGTGTCTCCGTTCAGATAAACGAGAATGACGACCTGCCTACAAATGTCTGCAGAAAATGTGTGGACAATGTCAACAATtggcatatttttaaattagtatgtGAAAAGACACAAAACAAACTAGAGTTACTGATTAAAAGGGATGGAGACCAACTAGAAGAGatTGACATAAAAAATGAACCTTTGTCTGATGAAGCATATGATGATGGTGTGATAATTGATGGCTCATACACAGATAATGATAATACCAATTCCAGCAAATTACAGCCAGAAGGTCCACCCATATTGGCATCCTTGGGTCTTACACCGAGGAGTGATAAGAAATATATAGACCCTCGAATGGACTGGCAACGAGTGCATGCAATACTGGACATGATTGAAGACGATGATGTAATAGATTCACTACAGTCCATAGAGGAATGTGATGTCATCCAACAATCTAATCACAACTCTGAATGTGAGGGTGAACTTCTAGGTGAAATAGATGATAGCTTTATCGATTGCAAAGATGGATACCGTTCAAAAAATAACAGACTTTTATCTAGAGTACCAAAAGTGTCTACCATTTCTAATAAgGGTATCGAAAGTGATAAAGACGAAGATGAAGACGAAGAAGATGAAGAAGAATTGGCTGGAGTGGCAAACTCAACACCTAAAGTACCAAATATGCCGGAAGTCTCTATCACGGTTATGAGATCAAGTGGCGAAACATTGCACTCCCGGCAAGGTATTCAACAGCTTGCTTCTAAAGACTGTCTTGTCTGTGGTCGGTCCTATAGATATTCTCATAATGCTAGACGACATGAGCTCACAGCCCATGGTTTTGACAGGTACACAAATACAATTACTAAGAAAAAATCACATACGCATAAGCAACCAAAACTGAGACCAAATCCTTTTAATCCAAAATCACGGTTAATGCCAAATCCTATAAGTCATAAAATGCAATTTATGGGCAAACCTATCGCTAACAAAATTATCCCACACAAAATTATTACACCCCCTGAACCAATATTAATAAAGTCTTTTAAAGGCCCACAAAGAAATAATTTGCCATATCCTTTACGCATAAAGGCTTTGAAAGACTTGcaaataaagaagaaagaaccacaaattttaaaaaccttGTTAACGTCCAAGCCTGAAGTGTTAGTCTCTGAACCAGAGATTATTAATTCGTGCCCAGAAAGTCCAGAAACATTAATATCTGAACCAGAACTTGCAACATTCCAAGTGGAAGCTATTCTATCAGAGCCAGATGCCTTTGATAATCCAGATGGATATGACCCACAACAAGATTATGATCCACAGCAGGACTCTTACGACCAGGGCCAAACTTCTTTTGACCATGAAGAGTCGTTTGATCAGCAGCCAGATGAATATGATCAGCAAGGCTGTGAAGAGGAAGAGGATGGGGACATGATCAATCATCAAAATCAACATTATGACACAGTGGACATGGAATCTGATAATGAAATAGAGATTGCGCGTAATAAACAAAGCAGAAGTGctggagaacaacatatcaagGACGTAAATGATAGTGAAAATGATGAAGAAAATCACAAAGACCCAGAAGAAACTAATACTGTGAAAAATGAGATACTTCCTAATAGtgatgaaaatgaagaaaaacatGATCAAAATGCTGTGGAAGAGGGCAGTGACAAAGATGGAAAACAGTCTGAGGAACAGGAAAATAATCATGATGAAGCtatggatgatgatgatgacctgCCACTTATGGATTTGGCACCTGTGGTAGAGATCAATGAAGATATGCAAGCCAATTCATGTAATACTGAGCAAAATGAAGAGGAGATTGCAGATACATCTGCAGCTAATGATACAACTGAAGTTACAGGGGCCCAGGAACTTGATCCTAACAAATTATATGTTACAAAAACACAAcgtgaatttataaaaaaatatcgggATATAATAGAACAGATAAACACAAAACGATGTCTCTGCTGTGATAGAGAACATCCTCGTAGAAAGGCAGTAATACAACATTTACAGAAAAATGGTCATAAAGTACCTAAGCATACTTGTTATAATTGTGTTGTAACATTTGGTCATATTGGTGCATTGCTTAGTCATATGCGGTCCAACACATGTACTGATTTATGGAAAATAATCTACAATGAAAATGGAATTACAGATGACTTAGTCTTACAGGATCCCATGAATAACAAAGCGCAGTATAAGGATATCTTCAATGCTAGGTCTTATGCTTGCAAGTTATGTCCTgctaaatttcaattaaaacagTTTATAATGAAACACGTGTTGGATGTACATGAAGATGGACAGTCTCGAGTACCACTGCATTGCGTGCATTGTGGATCAAGGTTTAAAGATAAGAGCCTGATAAAGAAACATATTCGTAACGGTGAATGTACTGTGTACATTGCTTGCGATCTATGCCCTGAAAAATTCAGACACATGCAAGATTTTAATGACCACGCATTGGCCGTTCATGCCGATAGCTATGAACAATCAGATATCCAAAACAAGTGTGTTGATGAGAGACCAACTGACTGCCCTATATGCGCTAAGAAGAACACTAGCTATCCGAATTTGATAaagcatttgaaaattatacaCAATGAAGAAAAACCGCATTATTGTCAACATTGTGATCTCAAATTCGAACAAGCTACTGACCTCAATAAGCACATCTATATGGAACATTCTGATAGAAGTTTAGGTGTGCAAAGTCATGAACCCGACATGTCTTTAGTGAAGGAAGAAGCTGAAGAGTACCATTACTCTTGCACAGAATGCAATGCCATATTTGAAACAGTTGATGCATGGACTGATCATCAAGTAGCCGAGCATAATCAAGTAGCTCACCATTGTGATCAATGTGAGAAGAAATTCCTTCGACCATCTGAATTAGCCGAGCATAAGAACAGCCACTTGCGTGTGAAATTTTATCCTTGCAGTGTCTGTACAAATTCTTACAGTACTCCTCAAAAGTTATCTGAGCATGTCCAACAAGCTCATCCTGGTGTTGGATCATTTGCTTCTGGAGAATCTGAATTCTATTGCGATATTTGTATAAGATCCTTCAAGAGTCGCCAAGCCTACTCAAACCATATGCGTATACATGCAAAAGTTCCGACAACAAACAGGAAGCCAGGAGATCCCAAAAGTTTTGCACCGCAAATCATTGGAAAACCTATTAAACAATACATTCAACAACCACAACCTAGCTTCGCTGCGTTCAAACCTAATTGTAATGTTCCGAATGCTCCTTATTCTTGTGATATCTGCGGTAAGGGCTTTATGCACAAGAAAAATATATGGAAACATAAAAAAGTCTTGCATGCGGATCTTGTTAATGACAGAAATGACAGTGAAGAGAATACAATGCATGGTTCTACTGAAGAGGACGAATATAATCCAGATGAGAATGGTTCTATGCTGTCTACACCCCAATTTAATAGCTTTAACTTCTCAAACTTCAATAATATGCAACAGCAACAGGATCCAGCGCCATTTTCGTGTGAACTTTGCTTTAAAAGGTTTCCACTTAGAACTAGTTTATGGAAACATAAACGAGCTAAACATGGTATAGTTAACATTAGTGCCGGTGGCACCGAGATGAAGTCCGATATGATGCCCAATGAAGCTGGCAATAGATCAAGCTGCACTAtttgtcaaatttcattttcagACAAAAAATCTTACTATCGACATAGAAAAAATGTTCACAAATCCACTGCGCAAATGTGTAAAATATGTGGTAAACCATTGAGTTCAACCTTGGAACTTTATGAGCATTTGAAATCTGCTCACGCACGCGAATTATTAGGCTACAGCGCTACACAGGGTTCCAGTAAAATGCCCGAAATAAAACAAGAACTTAGTTTGGATTACGACAATGATCAAGAGTTACTGGATCCTAGTGTAGAGTATCAAGCACGTTATCCTTGCGGTGCATGCGGTAAACAATTTGTAGGACTACTAGCACTACAAAATCATCAATGCATTAACCAACTACCGTCACAGCAACCGCAAACCTTTGATTGCGAGATATGTCACAAAAGTTACACCTCCATAGCAGCTCTGAAAAGTCATCGTGGCTGGCATTTGCGTTCTCCAGATGGAAAAGCAGCTGCCAATAATACGGGACTTTGGATGCCTCATAATAAAGTTACAAATAAAGTCAGTAAACATGAAGTACTGGATCCGTCGCAGTTAGCGCGCGTCCAACACGCGACGCCTGCAACAGTTGCAAAGAGGAGGCTGCCTCCGGAAGTGGAAGTCACCGTTGTCAATCCTAACAAAAAGTTGCGTTCGGACGACTCAGTAGAATTCGATCAGCAAAATTCTTCTAACGCCGAGGACAAATATTGCACGATATGTGACAAAGAGTTTACGAAGCGTGCAGCGTATCAACGTCACATGGACGAGGTACATCAGCCCAATTCGGTGTTTTGTCCTGTGTGCGATAAGAGTTTTACACGAAAATCGACGTTGTTAGCGCACATGAAGAAACATTACGAAAGCGGTGAGTGTAGTTCCGCGGAGACTGCTCACCTGGAGGACGATGTTAACGCTTGTGACTTGTGCGGGGCGCAGTACGACAGCGAGCAAGCTTTGAAGGCGCATAAAATAAGACATCACGCAGAAGAAGAATCTGGAGAGTCTGACGACGAAGGAAGTGTACCTATAGCACAACCCGGAGAATTTACCTGTGCTCAATGCGGTGACGGTGTAGCAACGCCGCGAGACCTCATTGCCCACCGTTCAATGCACGCTACACCCACCAAATTCTTCTGCAACATATGCAAAGTATACTTTGCGAGGGCATTGGATCTTTCGTCACACACGCGTGCGAGGCACGCGGACAACGAAAAGGTCTTTTTCCCGTGTGCCATGTGTGACCGTTTTTACATGAATAAAAAGAGTCTACAGCGGCATATTGAGATGGCTCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRSELLPIFPTTSSDESDPPVLALKIKDCVSVQINENDDLPTNVCRKCVDNVNNWHIFKLVCEKTQNKLELLIKRDGDQLEEIDIKNEPLSDEAYDDGVIIDGSYTDNDNTNSSKLQPEGPPILASLGLTPRSDKKYIDPRMDWQRVHAILDMIEDDDVIDSLQSIEECDVIQQSNHNSECEGELLGEIDDSFIDCKDGYRSKNNRLLSRVPKVSTISNKGIESDKDEDEDEEDEEELAGVANSTPKVPNMPEVSITVMRSSGETLHSRQGIQQLASKDCLVCGRSYRYSHNARRHELTAHGFDRYTNTITKKKSHTHKQPKLRPNPFNPKSRLMPNPISHKMQFMGKPIANKIIPHKIITPPEPILIKSFKGPQRNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSCPESPETLISEPELATFQVEAILSEPDAFDNPDGYDPQQDYDPQQDSYDQGQTSFDHEESFDQQPDEYDQQGCEEEEDGDMINHQNQHYDTVDMESDNEIEIARNKQSRSAGEQHIKDVNDSENDEENHKDPEETNTVKNEILPNSDENEEKHDQNAVEEGSDKDGKQSEEQENNHDEAMDDDDDLPLMDLAPVVEINEDMQANSCNTEQNEEEIADTSAANDTTEVTGAQELDPNKLYVTKTQREFIKKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLQDPMNNKAQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPLHCVHCGSRFKDKSLIKKHIRNGECTVYIACDLCPEKFRHMQDFNDHALAVHADSYEQSDIQNKCVDERPTDCPICAKKNTSYPNLIKHLKIIHNEEKPHYCQHCDLKFEQATDLNKHIYMEHSDRSLGVQSHEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNSHLRVKFYPCSVCTNSYSTPQKLSEHVQQAHPGVGSFASGESEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKSFAPQIIGKPIKQYIQQPQPSFAAFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNDRNDSEENTMHGSTEEDEYNPDENGSMLSTPQFNSFNFSNFNNMQQQQDPAPFSCELCFKRFPLRTSLWKHKRAKHGIVNISAGGTEMKSDMMPNEAGNRSSCTICQISFSDKKSYYRHRKNVHKSTAQMCKICGKPLSSTLELYEHLKSAHARELLGYSATQGSSKMPEIKQELSLDYDNDQELLDPSVEYQARYPCGACGKQFVGLLALQNHQCINQLPSQQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPHNKVTNKVSKHEVLDPSQLARVQHATPATVAKRRLPPEVEVTVVNPNKKLRSDDSVEFDQQNSSNAEDKYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLAHMKKHYESGECSSAETAHLEDDVNACDLCGAQYDSEQALKAHKIRHHAEEESGESDDEGSVPIAQPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -