Sinc023821.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071636.1:5342046-5345510[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0029 0.47 12.4 0.8 1 23 33 56 33 56 0.94 2 26 0.72 1.2e+02 4.9 0.7 5 23 84 103 82 103 0.94 3 26 0.0078 1.3 11.1 0.9 1 23 125 147 125 147 0.97 4 26 0.0048 0.78 11.7 2.7 1 23 151 173 151 173 0.96 5 26 0.09 15 7.7 4.1 1 23 177 200 177 200 0.91 6 26 0.024 4 9.5 1.0 2 23 207 229 206 229 0.95 7 26 0.00063 0.1 14.5 1.0 1 23 236 259 236 259 0.96 8 26 3e-05 0.005 18.7 4.2 1 23 265 287 265 287 0.98 9 26 2.4e-05 0.0039 19.0 1.3 1 23 293 315 293 315 0.99 10 26 0.076 12 8.0 0.1 1 17 321 337 321 338 0.94 11 26 0.0031 0.51 12.3 1.1 1 23 375 397 375 397 0.98 12 26 0.015 2.5 10.1 0.1 2 23 426 448 425 448 0.93 13 26 0.00043 0.07 15.0 0.1 3 23 470 491 468 491 0.96 14 26 0.0042 0.68 11.9 2.3 2 23 497 519 496 519 0.94 15 26 0.048 7.8 8.6 1.0 1 23 524 547 524 547 0.96 16 26 0.36 58 5.9 1.1 2 23 550 572 549 572 0.95 17 26 0.012 1.9 10.5 1.7 2 22 579 599 578 599 0.95 18 26 0.0015 0.24 13.4 0.8 1 23 658 681 658 681 0.92 19 26 0.27 44 6.2 0.4 3 23 710 731 708 731 0.95 20 26 0.026 4.3 9.4 0.2 2 23 754 777 753 777 0.95 21 26 0.00052 0.086 14.8 0.4 3 20 784 801 782 805 0.90 22 26 0.034 5.6 9.1 1.8 1 23 810 833 810 833 0.97 23 26 0.00034 0.055 15.4 0.1 2 23 839 861 839 861 0.94 24 26 7.5e-05 0.012 17.4 3.8 1 23 865 888 865 888 0.97 25 26 0.00027 0.043 15.7 0.7 2 23 895 916 894 916 0.96 26 26 0.005 0.82 11.7 2.9 1 23 922 944 922 944 0.97
Sequence Information
- Coding Sequence
- ATGACATCGACGAAACGTAATCGCCTCATGAAAAGAAACGCTATTCTTGTACTGGAAAATTCCACTGCCACGCCTTTCAAATGGCAACGGCACCAGTTTCTTTGTTTCTTTTGCCACATGCCTTTCGCCACGCCGCGAGAACTTATAGAACATACTAATACAGACCATAAGAAGTCCAATATAAAGTCAGCGGTAGATTTTTTACGGAGAGACGAGAAAGTAAAAATAGATATTGCGTCGTTACATTGCAATTGCGGTACTCGTTACGATGATTTGAATCTTTTGATAAGTCATTTGGAGAAAGATCACGCGAAAACTTTCACAGAAGGCTGCGGGTATGGATTGATTCCCTATAGGTTAAATGACAGTACATTCTATTGCGCAATATGCAATGAAGAGTTCCAATACTTCATGAAGCTCAATCAACATATGAACGACCATTATGGAAGCTACGTTTGTGAAACTTGCGGCAAATCATTTCTGAGTCAGGACAGACTTAGATCTCACTCTCATAGACACGGAGCAGGCTACAAATGTAATAAGTGCTCTCAATGTTTCGACTCGTTAACTCAGAGGAATAATCACGAGACAAACGTCCATAATATAGATAAGAAAGTAAAATGTTACTTCTGCCCAGAGACTTTCTCAAACTATAAAGAGAGGAAAATTCACCGCAGCTCGGTTCACAACTTGAAAATACCAGAATTCAAATGTCCCGATTGTgggaaaatatttcatataatgaGCAAAATGAAAGTGCACTTAAAAGAAGTGCATATAAGAGAGAAGAATTTCTCTTGTACAATCTGTGATCAGAGGTTTTTTTCTAAGAGTCACGTGCAAAAACATATGATTAAACATTTTGGCGAGAAAGTGTTTCAATGCAACGTATGCATGAAGTCGTATCCACGGAAACAAACATTAAGGGACCATATGCGAATTCATAGTAATGAGAAAAGATTTATATGTTCAGTGTGCAGCCAAGGCTTTGTTCAAAATAGCAGCTTGCGTATAAAATCGCGGAAATACAGGGGGTGTGAATCTTCATCGGTGCGCAGGCGACGAAACCTGCAAATACTCTTCAATAATACCACGATAATACCGTTTAAATGGCGTGGAAAATATATATGCTTTTATTGTAGTAAAGATGTAGCAGAGTATTCAGAATTGAAAAAGCATACGAAATCACATGATAAGTGTTCAATTAGGGATCATTCATTAATGGTTTTAAAAGGAGGTCAGAATATGGAGATCAAAATTGATGTATCAGAGATCATGTGTGAAATATGTAATGAACCTTTTTCTTCTTTCGATGAAATCTTAAATCATCTTTATGTTAAACACAAACTAGAGTATGACAAAGACGTAGACATGGCAATACAGGAATTTAGACTATCGGATCTGGCGTGTTTAATTTGCGGCGAGAAGTTCACTTACTTCGGGTATTTGGTCTCTCATATTAACACCAATCACCCGAAGAAATGTCTCATTTGCGATAAGTGTGAAcaaaagtttaacaaaaaacGTGATCTGTTCTCGCACTATAAGAATTATCACAGGGAAGGTGGTTATCAATGTGAATTGTGCCCTTCAAATTTTAGTTCCCTAAATATATTAAGGAAGCACAGGAACAATCGACATTTCTCTAGGTGCAACATATGCCATCTACAGCTGGCTACAGCGACTATGAAACAAAAGCACATTCAACTGGAACATCCAGACAACGGGTCGTTGCAATGTGGCAACTGCTTTAAGGAGTTTCATACCAAACAGGGACTAAAAATGCATCTTCGTAAATGCAAAAGAGAAGATGATCCGATGGAGTTAGATATCAAGAGAGAGGAAGACATTGAATATGGTACAGATTTTGAAGAACCAGTTAAAAGGCCTAGTGTGAAACAAATAAGGGAAAATATAGTCATTGTTATCAACATGTCAACAGCGATACCATTtaactttttcaaaaataaattcaattgctTCTATTGTTCAAAGGATTTTACTGATTCTGACTCTATGAGAGAGCACACGGTGGTAGAGCATCCTGTGTGTGATATCAAACAAAAGTGTATCAGGAAATGTAGAGAGACTGTGGCATGTGTCAAAATTGATGTTTCGTCGCTCGCTTGCAAAGTTTGCTTTGAATCGATGAACGATCTTGAACATTTGCTGGATCACCTAATTACGAAGCACGAAGCTAATTATGATAAATCTATCACTACCTGCTTACAGCCATACAGACTTATCAAGGATCACATGGTTTGTCCGAATTGTCCGGGGGAGGTGTTCCGATTTTTTGGAACACTGTTAAAACACATGAATAAAAAGCATACGAACAACAATATAATTTGCGTGTACTGTGGAGAAACGTTTCGTCGCGACCAGAATTTGCGTGTGCACATTTGGCGGCATCATAGAGACGGCCGTTTTAAGTGCACCATCTGTGACACTGATTGCAATATACCGTCTCGATTGTATATGCACATGGCGAAATTTCACGGCGTGAAAGCGGCTAAGTGTCCCGAATGCCCTGAAAGTTTTGCCACGCAGTATCTAAGGCAAAAACATTTGATCGAGGCTCATGACTCTGGACACAAATGTTCGTACTGTGGCAAATTGTTCACGAGAAACTCTTTCATGAGAGATCACGTACGGAGGATACACTTGAAAGAGAAAAACGTGGAATGCTCAATCTGCACAATGAAGTTCTTTAACAACGTCCTCTTACGGAGGCACATGGTGAAGCACAGTGGCGAAAAAAACTTCCATTGTGATATGTGCGGTGAAAGGTTTTTTTGGAAGAAAAGTTTGCGGACTCATATGGCGAGGCACAACAGAGACCCTTACAACAGCCTACATTGA
- Protein Sequence
- MTSTKRNRLMKRNAILVLENSTATPFKWQRHQFLCFFCHMPFATPRELIEHTNTDHKKSNIKSAVDFLRRDEKVKIDIASLHCNCGTRYDDLNLLISHLEKDHAKTFTEGCGYGLIPYRLNDSTFYCAICNEEFQYFMKLNQHMNDHYGSYVCETCGKSFLSQDRLRSHSHRHGAGYKCNKCSQCFDSLTQRNNHETNVHNIDKKVKCYFCPETFSNYKERKIHRSSVHNLKIPEFKCPDCGKIFHIMSKMKVHLKEVHIREKNFSCTICDQRFFSKSHVQKHMIKHFGEKVFQCNVCMKSYPRKQTLRDHMRIHSNEKRFICSVCSQGFVQNSSLRIKSRKYRGCESSSVRRRRNLQILFNNTTIIPFKWRGKYICFYCSKDVAEYSELKKHTKSHDKCSIRDHSLMVLKGGQNMEIKIDVSEIMCEICNEPFSSFDEILNHLYVKHKLEYDKDVDMAIQEFRLSDLACLICGEKFTYFGYLVSHINTNHPKKCLICDKCEQKFNKKRDLFSHYKNYHREGGYQCELCPSNFSSLNILRKHRNNRHFSRCNICHLQLATATMKQKHIQLEHPDNGSLQCGNCFKEFHTKQGLKMHLRKCKREDDPMELDIKREEDIEYGTDFEEPVKRPSVKQIRENIVIVINMSTAIPFNFFKNKFNCFYCSKDFTDSDSMREHTVVEHPVCDIKQKCIRKCRETVACVKIDVSSLACKVCFESMNDLEHLLDHLITKHEANYDKSITTCLQPYRLIKDHMVCPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCTICDTDCNIPSRLYMHMAKFHGVKAAKCPECPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHVRRIHLKEKNVECSICTMKFFNNVLLRRHMVKHSGEKNFHCDMCGERFFWKKSLRTHMARHNRDPYNSLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -