Sinc023819.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071636.1:5331254-5337331[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.023 3.7 9.6 2.4 1 23 53 75 53 75 0.95 2 33 0.96 1.6e+02 4.5 0.1 3 23 104 125 102 125 0.89 3 33 0.13 21 7.2 0.4 2 23 146 168 145 168 0.95 4 33 0.12 19 7.4 3.7 1 21 173 193 173 196 0.91 5 33 0.00022 0.036 16.0 2.6 1 23 201 224 201 224 0.97 6 33 0.0012 0.19 13.7 0.4 2 23 227 249 227 249 0.96 7 33 3.1 5.1e+02 2.9 1.1 2 20 256 274 255 276 0.92 8 33 0.0014 0.23 13.4 0.8 1 23 330 353 330 353 0.95 9 33 3.9 6.3e+02 2.6 0.0 3 23 382 403 380 403 0.90 10 33 7 1.1e+03 1.8 0.1 2 23 426 449 425 449 0.90 11 33 7.7e-05 0.013 17.4 0.2 3 23 456 477 455 477 0.94 12 33 0.089 15 7.8 6.5 2 23 482 504 481 504 0.94 13 33 0.0096 1.6 10.8 3.2 1 23 509 532 509 532 0.97 14 33 1.1e-05 0.0018 20.0 4.2 1 23 536 559 536 559 0.97 15 33 0.0013 0.22 13.5 0.3 2 23 566 587 565 587 0.96 16 33 2.1e-05 0.0035 19.1 1.7 1 23 593 615 593 615 0.98 17 33 3 5e+02 2.9 0.1 2 23 725 747 724 747 0.90 18 33 0.033 5.3 9.1 0.1 2 23 770 792 770 792 0.94 19 33 0.0043 0.71 11.9 1.9 1 23 797 820 797 820 0.94 20 33 0.00026 0.042 15.7 1.3 1 23 823 846 823 846 0.97 21 33 2.6 4.2e+02 3.1 4.1 1 19 851 869 851 874 0.93 22 33 0.048 7.8 8.6 2.7 1 23 878 901 878 901 0.97 23 33 0.00017 0.028 16.3 1.4 2 23 908 929 907 929 0.97 24 33 0.031 5.1 9.2 0.1 1 23 982 1004 982 1004 0.95 25 33 0.0081 1.3 11.0 0.1 2 23 1035 1057 1034 1057 0.94 26 33 0.059 9.6 8.3 3.2 2 23 1080 1101 1080 1102 0.95 27 33 0.0043 0.7 11.9 1.5 1 23 1107 1130 1107 1130 0.95 28 33 2.1 3.5e+02 3.4 0.3 1 23 1135 1158 1135 1158 0.92 29 33 0.0063 1 11.4 1.0 2 23 1164 1186 1163 1186 0.92 30 33 0.00029 0.048 15.6 0.1 2 23 1194 1216 1193 1216 0.97 31 33 0.015 2.5 10.2 0.1 2 23 1223 1244 1222 1244 0.95 32 33 1.4e-07 2.3e-05 26.0 0.8 1 23 1250 1272 1250 1272 0.98 33 33 0.00028 0.046 15.6 5.4 1 23 1278 1301 1278 1301 0.95
Sequence Information
- Coding Sequence
- ATGTTTGTTAAGACGGACATTGACAGCGGGCTAAATTTGTTTTCAGATGAAAATGCGCCGGCACCTTACGAAGGATGCGCCTCTGAGCGCAGGAGGAAAAACTTGAAAACGTTATTCAACAACACCACAGTGCTGCCTTTTAAATGGCGCGGCAGATACCTATGTTTCTATTGTCCTATGAATTGTAAAGATTACGAAGAATTGAGAAATCACACACTGTCGCACGGCTCTTGCACAACCAAGGATTATTCTCTGAGAATCATTAAAGGAAAACACATAGAAATAAAGATAGACGTTTCGGAAATCAATTGTGGTATTTGCAATGAACCGTTCCATGACTTAAATGAGATAATAGATCATTTAATTGGAAAGCACAAGATGGATTTTGACAAAACTGTCGATATACCCATCCAAACCTATAGACTGCGAGACTTAACATGTCTATTCTGCGAAGAGAAGTTCTCTTATTTTGGATTTTTGATAAGTCACGTGAATATATCTCATCCCAagaattgttttatttgcgaCGATTGTGGagctacatttaataaaaaacgtgATTTATCTTTTCATATTAGATGCCATCACAGAAAAGGTGGATATCCCTGTGATGAATGTTCAAAGCACTTcattaatttttacttattaagaaGACATAAAAACAGTGTGCATTGTAGGAAGTGTAACAGTTGTAACCTCCGTTTCGCGTCTTTGGCTCTCCTCCAAAAGCACATATCTATGGAGCATCCCAACGATGGCAACCTTATTTGTGAATTTTGTGCaaaacagtgttattcattgcAAGGGTTGAACAAGCACAGAAGTCAgtgcaaaattaaatttttagttcCCCCTACTGAAACTGACAAGTACTTCCCCCTATATAACGTGGAGTCTAGAAAAAAACAAGACATCAAACAAATTCGCAAGAACATACAATGTGTTTTGAATATGTCCACGGCGGTGCCGTTTAAGTTTTTCTCGAAATTCTCGtgtttttattgtacaaaaaaatttgTAGAATTCGATGAACTCAAAGCACACACGGAGATCGAGCATCCTACTTGCGAACTGAAATCAAAATCTATGAGGAAGTGTAAAGGGGAAAGGGTCAGCGTTAAAATAGATGTAAACAACCTCGCATGTAAAGTTTGCGGTCTTGAAGCAGGTTCTTTGGACATGCTGGTAGATCATTTAATATTAGAACATAAAGCAAACTACGACAAATCGATAGTAGGCTGTTTAGAGCCTTTTAAAATCATGAAGGATAACATTCCATGCCCTTTGTGTTCAGATCGAGTCTTTAGATACTTCGGTATTCTGCTACGCCACTTGAACTCGGACCACAGTAATAATAACAGGATATGTGATTTCTGTGGCCGCAGTTTCAAGAATGTTGCCAATCTTAACGTTCATATCTCGTACACGCACACTGGGTCATGCGAATGTAATATTTGCGGGTCTAAGTACAAGAATCAGTGGTGCTTGGCGCGGCACCGGGCCAAATGTCACAACGCGAAAGATTATAAGTGCCCTAAGTGTGTTGAGCAATTTCAGTCCCAGTACCATAAGCAAAAGCATCTGATTAAGGTTCACAATATAGGGCACAAATGTGAGCAATGTGGTAAGATGTTTACGCGAAACTCGTTCATGAAAGATCACATACGTAGGACGCATCTACGAGAGAAAAATGTTCCGTGCTCCGTTTGCAGTGAAAAGTTCTTTGATAATTACTTGCTTAGAATGCACATGGTGAAGCACGACGGTGAGAGGAAGTTCAGCTGCAGTGTTTGCGGGAAAGCCTTTTTGAGACGCAGCAACCTCCATTCTCACATGGAGATGCATAAAAAGTATGGACACATAGATGAAAATGGGCCAGCAAAAGCTCTTACCGCCATAGACATTCGCACGTGGCCACGACCGATAAACAAAACATGTAGGACTTTCAACACTAAAAGGCGCGATATCGCTACTATTTTAAACGCATCTAATGCAGTTCCATTCAAGTATTTTCTCAATAAGTTCCGCTGCTTCTTTTGCCCTGAACTCAGTGACGATTTCGAGGTCATCAGATCTCACTATAGGTTCGAACATGACTTCCATGTGACTGATAGGTTGCTGCAGTTTATCAAAGGGAACGACGTCAAAATCAAGTTGGAGATATCGTCGCTCAGATGTAAATTGTGTGAGGTTCCTTTGTCTGATTTAACCTCTTTCATTGACCACGTAGGTTCAACACACAGTCTCAAATGGGATCTGCAAAACAATTCAATGTTCCTAACGTTCAGAATACAAAAAGGTCACAATGAATGTCCGATTTGTTTAAAACCTTTCGTATATTTCACAAAAATGTTAGCGCATATGAACGACGAGCATTCGAATAGTGAATTTCTCTGCGATATTTGTGGTCGCACGTTCATGAACAAGTATAACCATGCGATACATATGTCGAGGTACCATAGGCGACACAAGTGCAACGTCTGCGACGAGAACTTCCAAAGCGTGTCCAAGCTGAGAGTTCACCAGAAGGTCGTACACAATTTGAAGCGTTATAAATGCGCTCAGTGCAACCAAAATTTTGAATCGCACTACTTGAAGCAAAAGCACTGTATCGAAGCTCACGGAGGCGGTTTCACTTGCGCTTACTGCAAGTCAAAGTTCACCAAGAACTCGCGTTTAGTATATCATGTAAACAGTAAGCATCTCAAAGAAAGGAACGTGCAGTGTGCAGTATGTAACGAGAGGTTTTTCAATAATACCCATTTGAAAATCCACATGGCCAAGCACGAGGGCTCCCGCGATTTCCACTGTGCCAAGTGCAACACTGTGGAGGACAAAGATAAGAAATTGGCAATAGCCCATAAGCTACTCGTAAAACGGCGaaacattgaatatattttacaatacagTAACGTCACACCCTTCCTGTGGTACAAGGGAAAATACAGATGCTTCTATTGCACAGAACCCGTGAAAGACCCTATAGCACTACGCAGCCACACTGTTTTGCACGACGGCGAAAATATTGAGTTAATTGTTCACgatagaacaaaaaataacagaaataaaGACGCCGCCGTGAAAATAGATGTCACTGATATGATGTGCAAACTTTGCCCAAAAGCCATTTCCAATCTTGAGGAGCTGATTCACCATCTAATCATTGCTCACGATGCTGAGTACGATGTTAGTGTTCCTAACTGTTTTCTGCCGTTTAAACTTGATAAGGAGCAGCCCACCTGCTCAACTTGCAACATGAAATTTGTGTTTTTCGAATACCTTTTACGACACGCAAATAAACATCACCTCTCTCATGACTACATTTGTGATGTTTGTGGTACAAGTTTCCAGGGTGAGAACCATCTAAAGATGCATAATAGATACTACCATAGGCAGGGTGGATACTCCTGCGAGTACTGCGCAGTAAGCTTAACAACACTCTCCAAAAAGATATTGCACGAAAAGAACGTACATTTGGTCAATTTGTCCACTTGCCCCCACTGTCCGGAAACATTTAAAAGTCCCTATTTCAAGAAGCTGCATTTGGCTAATGTGCACGGCGTAGAAGAATTAAAAATCAAGTGCCCTTACTGTCCGAAAGTATATCCTCAAGAAAGCATTATGTCGAGGCATATGAGGCGTGTTCATTTACGAGAGAAGAATGTGGAATGCGAAGTTTGCGGTGACAAGTTTTTCGGACCTTACGACTTGAAACTCCATATGGTGAAACACAATggcgaaaaaaaatttgtttgtgcAGTCTGCGGAAAAAAGTTTTCCAAGAAGAGTAATCTCAATGCTCATACTAACACACATTCAGACGACAAACGCTACCTCTGCCTACTTTGTAATAAGTCTTTTTCTCAGCAGTCCTGTTATAAGTACCATATGAGAAGTAAGCACGAGAATGCCACACAAGATAATTCCACTGAAATTGGTGATGCTGTTTTGGTTCAGATGGACTTTATTACTGACGATTTTGTTAGTGGTGAAGTGATTGAGGATAAATCAGTTATGATGAACTAA
- Protein Sequence
- MFVKTDIDSGLNLFSDENAPAPYEGCASERRRKNLKTLFNNTTVLPFKWRGRYLCFYCPMNCKDYEELRNHTLSHGSCTTKDYSLRIIKGKHIEIKIDVSEINCGICNEPFHDLNEIIDHLIGKHKMDFDKTVDIPIQTYRLRDLTCLFCEEKFSYFGFLISHVNISHPKNCFICDDCGATFNKKRDLSFHIRCHHRKGGYPCDECSKHFINFYLLRRHKNSVHCRKCNSCNLRFASLALLQKHISMEHPNDGNLICEFCAKQCYSLQGLNKHRSQCKIKFLVPPTETDKYFPLYNVESRKKQDIKQIRKNIQCVLNMSTAVPFKFFSKFSCFYCTKKFVEFDELKAHTEIEHPTCELKSKSMRKCKGERVSVKIDVNNLACKVCGLEAGSLDMLVDHLILEHKANYDKSIVGCLEPFKIMKDNIPCPLCSDRVFRYFGILLRHLNSDHSNNNRICDFCGRSFKNVANLNVHISYTHTGSCECNICGSKYKNQWCLARHRAKCHNAKDYKCPKCVEQFQSQYHKQKHLIKVHNIGHKCEQCGKMFTRNSFMKDHIRRTHLREKNVPCSVCSEKFFDNYLLRMHMVKHDGERKFSCSVCGKAFLRRSNLHSHMEMHKKYGHIDENGPAKALTAIDIRTWPRPINKTCRTFNTKRRDIATILNASNAVPFKYFLNKFRCFFCPELSDDFEVIRSHYRFEHDFHVTDRLLQFIKGNDVKIKLEISSLRCKLCEVPLSDLTSFIDHVGSTHSLKWDLQNNSMFLTFRIQKGHNECPICLKPFVYFTKMLAHMNDEHSNSEFLCDICGRTFMNKYNHAIHMSRYHRRHKCNVCDENFQSVSKLRVHQKVVHNLKRYKCAQCNQNFESHYLKQKHCIEAHGGGFTCAYCKSKFTKNSRLVYHVNSKHLKERNVQCAVCNERFFNNTHLKIHMAKHEGSRDFHCAKCNTVEDKDKKLAIAHKLLVKRRNIEYILQYSNVTPFLWYKGKYRCFYCTEPVKDPIALRSHTVLHDGENIELIVHDRTKNNRNKDAAVKIDVTDMMCKLCPKAISNLEELIHHLIIAHDAEYDVSVPNCFLPFKLDKEQPTCSTCNMKFVFFEYLLRHANKHHLSHDYICDVCGTSFQGENHLKMHNRYYHRQGGYSCEYCAVSLTTLSKKILHEKNVHLVNLSTCPHCPETFKSPYFKKLHLANVHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDLKLHMVKHNGEKKFVCAVCGKKFSKKSNLNAHTNTHSDDKRYLCLLCNKSFSQQSCYKYHMRSKHENATQDNSTEIGDAVLVQMDFITDDFVSGEVIEDKSVMMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -