Sinc027091.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071638.1:5236285-5250327[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.052 8.5 8.5 1.1 1 23 13 35 13 35 0.94 2 21 1.5e-05 0.0024 19.6 0.4 1 23 51 73 51 73 0.96 3 21 6.4 1e+03 1.9 0.1 6 21 82 97 80 100 0.86 4 21 1.5e-05 0.0024 19.7 0.7 2 23 175 196 174 196 0.96 5 21 2.7e-05 0.0044 18.8 1.0 1 23 202 224 202 224 0.96 6 21 2.1e-05 0.0034 19.2 1.0 2 23 231 252 230 252 0.96 7 21 0.0009 0.15 14.0 0.3 1 23 258 280 258 280 0.97 8 21 6.2e-06 0.001 20.8 1.8 1 23 286 309 286 309 0.96 9 21 0.0012 0.2 13.6 9.1 1 23 317 339 317 339 0.98 10 21 0.0002 0.033 16.1 0.6 1 23 345 368 345 368 0.95 11 21 0.0018 0.3 13.0 1.3 2 23 375 397 374 397 0.96 12 21 1.9 3.2e+02 3.5 0.5 1 11 403 413 403 419 0.75 13 21 7.8 1.3e+03 1.6 6.0 2 23 429 450 428 450 0.95 14 21 0.00016 0.026 16.4 2.2 1 23 466 488 466 488 0.97 15 21 1.1 1.9e+02 4.3 0.6 5 23 496 515 493 515 0.88 16 21 1e-05 0.0017 20.1 0.6 1 23 591 613 591 613 0.98 17 21 4.3e-05 0.007 18.2 0.7 1 23 619 641 619 641 0.98 18 21 4.3e-07 7e-05 24.5 1.5 1 23 647 669 647 669 0.99 19 21 0.0021 0.34 12.9 0.3 1 23 675 697 675 697 0.98 20 21 0.0007 0.11 14.4 0.8 1 20 703 722 703 723 0.95 21 21 3e-06 0.00048 21.8 6.6 1 23 732 755 732 755 0.97
Sequence Information
- Coding Sequence
- ATGCTGTCTGCCCGGGTGGTGATAGaaaaactaaaatttctatgtcagaaatgtcctatgaaatttgaatattatagaGACTATCAAATTCACAAAGCATCCCATGTGACAGtGCTGCCGAAAATCGCATCAGACCGCTTTACAAAGAAGTTCAAATGTGAGGAATGTGACGAAAAGTTTGTACACAGAAGTACGTTAGAAGCGCACGGCGCGGTGCACGCGCCGCCGCCGCACGCGTGCCGCTGCGGCGTGCGCTTCTACGCGCCGCAAGACTTGCGCACGCACAACGCGCTGGTGCACGCCGCCGACCTGCAGCGGGAGCTGCCCACGCTGAACTGCAGGCAGCAGAGGCAACTGAGACGTGAAGCATGGGTACCAAAAATTAACTACACCGGTCCTAAATATGAAACAGATTCCTtcgaagaaaaaaaagaaataaaaccaagACTGAAGGCTAtgcttaaaatcaaatcaaagaaACCCGCAAAACTACCATACAAGAGAGGCGACTATGTCCGGTGCTATTGTGATTTGTGTGGCAAAGAATTCAGTCAAAGGGCAGCTCTTAGTATTCACTTGAAAGTACACGCGGGTATTTTGGATCATGCGTGCGGTTATTGTGGGAAAAAATTTGTCACAAAGTATGCTATGGCGTTACATGAAAGAACTCACACGGGTATTAAACCATGTATCTGTAAGTTTTGTGCTAAAAGCTTTGCAGATCCTTCCGCTTTGTTGCGGCACGAGCGCACGCACACTGGTGTGAAGCCGTACGCGTGCAAGTTTTGCGGGAAGTTGTTTAGCGATGCGAGCGCCAAAATAGTGCACGAAAAGCGACACCTAAAACAGAGGTCATTTGAATGCAATGAATGCTACAAGAAGTTTTACAATAAGACCGAATTGAAAAATCACATGATGGCAATGCACAGTGATGAAAGTGCTCGTATATTTGAGTGCCATCACTGTCATAAAAGTTACAAGCTCAAGTATTATCTACGCCTACATTTGGATACTCACAAGAAAATACGCCCCTTCGAATGCAATGATTGTGGTTTGAAATACGTCTCCAAATTATATTTGAGGCAACACATAGAAAACCGACACAACcttgttaaaaaattaaaatgcgaCCAGTGTAATACAAAGTTTTTGTATAAATCAGGTTTAAGAAAACATGTTCAAACTGTGCACACAAAGTCTCAGGTGTACATTTGCGACCATTGTGGAATGCGAACATTCTCCAAGTTTACGTCCGTGCAAGTCTTAGTTGAAAGGttgaaattaaaatgcaagAAGTGTCGATGCACATTTGTGTGCTATAATGAATATCAAAGTCACATTGCTTCACACGTAACTGAGCAGTCCAGACACGATGCAAATCGCTTTAGAATGAAACACAAGTGTAAGCAATGCAGAAGGAAGTTTGTGCAATTGAGTACATTAAAGGCTCACGCTATTGTCCACAAGCCTTTCCCTCATATGTGCCACTGCGGTGTCGGCTTCCGCGCCAGGGCGGACCTGCAGAGCCACGAGGCTTTAGTGCATATACCACACATTAAAAAGGAGCTATCACACTCAAACATTGAACAGAAGTCGATGTcattcacaaaaaataataataaacataacttaACAAAATGTATAGACGGCTTCTTTCAAAATCCTCCTACAAATTACCGCACGAAACTGAATGTTATGCGAATTAATCAGACGAATATGGCGGAAATATTGAAAAACGTAGACATCAAAAGAGGAACTGCCGAGAGGCCATTTATATGCGATCTGTGCGGCAAAGGATACACGCAAAAGATAACACTGAAGCTTCATATAAAAAGACACGCTGGTATCCTCGACTATACTTGCAACTATTGTGGGAAAAAGGTGTTCGAGCTAGGTGCACTGCGTCGGCACGAGAGGACGCACACGGGAGCAAAGCCTTATGAGTGTAGTTTTTGTCACAAAGGATTCTCAGATCCCTCGGCTCTAATGCGGCACGAACGCACGCACACTAACGTGAAGCCTTATAAATGCAAATTATGCGGCATGCTCTTCAGCGACGCTAGCGGCCGGATAGAACACGAGAAGCGACACTGGAGACAGAAGAAATACGAATGCGACAAGTGCCCACGTCAATTTTACACTAAGCACGACTTAGTGAGTCACGCCCAATGCGTCCATAGCGACGTAAGACGGTTTAAATGTGATCATTGTCACAAAAGCTTCAAGCGAAAATCGTATCTGTACATTCATATGATAATTTATCACACAAAGGGTAGACAGTACGAGTCACATGCAAACCAGGCACCGTGA
- Protein Sequence
- MLSARVVIEKLKFLCQKCPMKFEYYRDYQIHKASHVTVLPKIASDRFTKKFKCEECDEKFVHRSTLEAHGAVHAPPPHACRCGVRFYAPQDLRTHNALVHAADLQRELPTLNCRQQRQLRREAWVPKINYTGPKYETDSFEEKKEIKPRLKAMLKIKSKKPAKLPYKRGDYVRCYCDLCGKEFSQRAALSIHLKVHAGILDHACGYCGKKFVTKYAMALHERTHTGIKPCICKFCAKSFADPSALLRHERTHTGVKPYACKFCGKLFSDASAKIVHEKRHLKQRSFECNECYKKFYNKTELKNHMMAMHSDESARIFECHHCHKSYKLKYYLRLHLDTHKKIRPFECNDCGLKYVSKLYLRQHIENRHNLVKKLKCDQCNTKFLYKSGLRKHVQTVHTKSQVYICDHCGMRTFSKFTSVQVLVERLKLKCKKCRCTFVCYNEYQSHIASHVTEQSRHDANRFRMKHKCKQCRRKFVQLSTLKAHAIVHKPFPHMCHCGVGFRARADLQSHEALVHIPHIKKELSHSNIEQKSMSFTKNNNKHNLTKCIDGFFQNPPTNYRTKLNVMRINQTNMAEILKNVDIKRGTAERPFICDLCGKGYTQKITLKLHIKRHAGILDYTCNYCGKKVFELGALRRHERTHTGAKPYECSFCHKGFSDPSALMRHERTHTNVKPYKCKLCGMLFSDASGRIEHEKRHWRQKKYECDKCPRQFYTKHDLVSHAQCVHSDVRRFKCDHCHKSFKRKSYLYIHMIIYHTKGRQYESHANQAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -