Basic Information

Insect: Scirpophaga incertulas
Gene Symbol: -
Assembly: GCA_036419045.1
Location: CM071632.1:18349477-18385024[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 6.9e-05 0.011 17.5 0.5 2 23 420 441 420 441 0.97

2 20 0.0038 0.62 12.1 0.6 1 20 447 466 447 469 0.94

3 20 8.3e-06 0.0014 20.4 3.4 1 23 488 510 488 510 0.98

4 20 1.8e-05 0.0029 19.4 3.9 1 23 516 538 516 538 0.99

5 20 3.2e-05 0.0053 18.6 5.3 1 23 544 566 544 566 0.97

6 20 1.5e-06 0.00025 22.7 6.3 1 23 572 594 572 594 0.98

7 20 1.7e-06 0.00028 22.6 2.8 1 23 600 622 600 622 0.97

8 20 9.2e-05 0.015 17.1 6.7 1 23 628 650 628 650 0.97

9 20 9.1e-05 0.015 17.2 6.5 1 23 656 678 656 678 0.97

10 20 4.4e-07 7.2e-05 24.4 1.9 1 23 684 706 684 706 0.98

11 20 4.5e-05 0.0074 18.1 7.9 1 23 712 734 712 734 0.98

12 20 2.3e-05 0.0038 19.0 6.6 1 23 740 762 740 762 0.98

13 20 6e-06 0.00098 20.9 6.5 1 23 768 790 768 790 0.98

14 20 1.5e-05 0.0025 19.6 5.4 1 23 797 819 797 819 0.96

15 20 4.3e-05 0.007 18.2 7.0 1 23 825 847 825 847 0.97

16 20 4.4e-06 0.00071 21.3 5.9 1 23 853 875 853 875 0.98

17 20 4e-05 0.0065 18.3 8.0 1 23 881 903 881 903 0.98

18 20 6.5e-06 0.0011 20.8 4.2 1 23 909 931 909 931 0.97

19 20 0.00074 0.12 14.3 0.3 1 23 938 960 938 960 0.96

20 20 0.17 28 6.9 5.0 1 23 969 991 969 991 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	6.9e-05	0.011	17.5	0.5	2	23	420	441	420	441	0.97
2	20	0.0038	0.62	12.1	0.6	1	20	447	466	447	469	0.94
3	20	8.3e-06	0.0014	20.4	3.4	1	23	488	510	488	510	0.98
4	20	1.8e-05	0.0029	19.4	3.9	1	23	516	538	516	538	0.99
5	20	3.2e-05	0.0053	18.6	5.3	1	23	544	566	544	566	0.97
6	20	1.5e-06	0.00025	22.7	6.3	1	23	572	594	572	594	0.98
7	20	1.7e-06	0.00028	22.6	2.8	1	23	600	622	600	622	0.97
8	20	9.2e-05	0.015	17.1	6.7	1	23	628	650	628	650	0.97
9	20	9.1e-05	0.015	17.2	6.5	1	23	656	678	656	678	0.97
10	20	4.4e-07	7.2e-05	24.4	1.9	1	23	684	706	684	706	0.98
11	20	4.5e-05	0.0074	18.1	7.9	1	23	712	734	712	734	0.98
12	20	2.3e-05	0.0038	19.0	6.6	1	23	740	762	740	762	0.98
13	20	6e-06	0.00098	20.9	6.5	1	23	768	790	768	790	0.98
14	20	1.5e-05	0.0025	19.6	5.4	1	23	797	819	797	819	0.96
15	20	4.3e-05	0.007	18.2	7.0	1	23	825	847	825	847	0.97
16	20	4.4e-06	0.00071	21.3	5.9	1	23	853	875	853	875	0.98
17	20	4e-05	0.0065	18.3	8.0	1	23	881	903	881	903	0.98
18	20	6.5e-06	0.0011	20.8	4.2	1	23	909	931	909	931	0.97
19	20	0.00074	0.12	14.3	0.3	1	23	938	960	938	960	0.96
20	20	0.17	28	6.9	5.0	1	23	969	991	969	991	0.99

Sequence Information

Coding Sequence: ATGAATCCAGAACACCACAGTATCAATACGGGTGGTGGCCAGCCTCCTGGAAGTTCCGAGTCACAAAATCAAAGAGTTCAAAATGCACAACAACAACAGCAGGGTAATAATTTACCCGCCACAACCTCTGCGACAGATTTAAGAGTTAATTCTGCTGCAGTAAACGTCGCTTTATCAAGCGTTGCCAAATATTgggtatttacaaatttatttcctGGACCTATACCGCAAGTTTCTGTTTATGGATTACCCACTGGTACTAGAATTGAAAATGGCAAGCCTGTCCAGctCTTACAGGACCTTGGACAAACTCATGCCAGTATACTCAATGGTGATCCCAACATTATTTTGGGGCATCATAGTGGGCAGTCACAAGTTACTGTTTCAGGAACTCAGCAAATACCTGTATCACAGATCATTGCAACACAATCTGGACAAACTCATGAGACACTGGTGACTCACAATCAACACCAGGATCTGACACAACAGACTACGAGTAATGCTCAAGTCACTGTTAGTCCAACACAAGCCACTCACCAGCAGGTACCCAATAACCGGGTCGAGTTTATACAACACCATAACATTGATATGGGACATCATTCTCAACAACACTTATTACAACAACAACTACTGGCTAGTACTCGTCCAGAACATGCTAATCAACAGATCCAGTTAACAGTGAGTGAAGATGGTATTGTCACTGTAGTGGAGCCAGGTGCCAAATTGGTTGACAAGGATGAGTTGCATGATGCAATTAAGTTGCCAGGAGATCATACATTGACTGTACAGCAACTACAACAACTTGTGGGGCAGCAGgtTATCGACAGTGTTGTAAGAATAGAGCAAGCAACAGGTGAACCTGCTAATATCCTAGTAACACATAATCCAGATGGTACCACATCCATAGAAGCCAGTGCTGCTGAACAACTCATTGTTAAAGACgagaaaaatgcagccaaaattGAGGCTGCACAATATGCAGATATTAAGGATTTAAAGGGCATTGacttaaaaagTGTGGGTGCAATGGGAATGGAAGGTGCAGTTGTAAAAATATCCGGAGGTACTGAACACGATCTCCACGGAATGTACAAAGTTAATGTAGAAGATTTGTCACAACTTCTCGCCTATCATGAAGTATTCGGGAAACTAAATGCTGATGGACAGCCTCAGACTAAGCAAATTTTAACTGAGGTTGATGTAGAAGCAGGACCGAGTGCAGGGATGTCTGAAGCTGAAACATCACCAAGTCACAACTCATGTGATATTTGTGGAAAAATATTCCAGTTCCGCTATCAATTGATTGTCCATAGGCGCTATCATGGGGAAAGCAAACCTTTTACATGTCAAGTATGTGGATCTGCTTTTGCCAATCCTGTTGAATTATCAAGACATGGAAAATGTCATCTcgCTGGAGACCCAGTCGAAAGACACGCAAAAAGATTGGCTCAAGATAAACCATATGCTTGCACCACGTGCCAAAAAACTTTTTCCCGTAAGGAACACTTGGATAACCACGTACGAAGCCACACCGGAGAAACACCTTATAGATGTGAATACTGCGCTAAAACATTCACCCGCAAAGAACACATGGTGAATCATGTTAGGAAACATACTGGTGAGACACCACACCGCTGTGAAATTTGTAAGAAGAGTTTCACCAGGAAGGAGCACTTCATGAATCATGTCATGTGGCACACAGGTGAAACACCGCATCAATGCCAAATGTGTGGCAAGAAGTATACTAGGAAGGAGCATTTGATGAATCATATGCGATCGCATACAAATGACACTCCGTTTCGCTGCGATCTCTGCGGCAAGTCGTTCACAAGAAAAGAACATTTCAGTAATCACATATTATGGCATACAGGTGAGACGCCACATCGCTGTGACTTTTGTTCGAAAACTTTTACCCGCAAGGAACACCTGTTGAACCACGTGCGGCAGCACACTGGTGAGTCGCCGCACCGCTGCAACTTCTGCTCGAAGTCGTTCACGCGGCGCGAACACCTCGTTAACCACGTGAGGCAACATACCGGCGAGACGCCGTTCCAGTGCGGTTACTGCCCCAAAGCATTCACCAGAAAGGATCATTTAGTAAACCACGTAAGGCAACATACCGGGGAATCGCCTCACAAATGTTCGTTCTGCACGAAGTCCTTCACGCGCAAAGAACACCTCACCAACCACGTGCGACAACACACAGGCGAGTCGCCCCATCGCTGCACGTACTGCGCCAAATCATTTACAAGAAAGGAACACCTCACAAATCACGTAAGACAGCACACGGGTGAAACTCCACACAAGTGTACGTACTGCACGCGAGCGTTTTCGCGCAAGGAACACCTGAACAACCACATTCGCCAACACACCGGCGAAGTGGCGCAACACGCCTGCACCTACTGCACGAAGACATTTAACAGAAAGGAGCACCTCGTCAATCATATCAGACAACATACAGGGGAGACACCTTTCAAGTGCACTTACTGCTCGAGATCATTCTCGCGCAAGGAGCATCTCACGAACCACGTGCATCTGCACACAGGCGAGACACCCCACAAGTGCGCCTACTGCACAAAGACATTCTCTAGGAAAGAGCATTTAACCAACCACGTTCGGATTCACACAGGCGAATCGCCGCATAAATGCGAGTTTTGCCAAAAGACGTTCACGCGTAAAGAGCACTTGACCAACCATCTGAAACAACACACCGGTGATACACCGCACACGTGTAAAATGTGCTCGAAGCCGTTCACAAGAAAGGAGCATCTTATTACGCATATTAGAGCACATAGTTGCGGTCAGCGGCCGTTTAGTTGTGGAGAGTGCGGCAAAACTTTCCCGCTAAAGGGCAACTTACTTTTCCATGAAAGATCGCATAGTAAAAACGCAGGATCAAGGCCGTATCGATGTGACTTCTGTCCAAAAGAATTCTTATGTAAagGACATTTGTCGGCGCATCGCCGTACCCACCCCGAAGCAACAGAGGAGACTGCTGTCACGGGCGCCACTAACGCGGACGATTGCGTCGACAAGTGCGTGAAGGTGGAACCCGACCGACCCGAAAGAAAACACGAAATCAGgGTGACTACTGAGAGTAGACCTCCTGAGACTAACGTACCACCAAACCAAGAACAAAGCACTGCGACTGTGATGCAAATTACAACCCAGCAAGTCCGCACTGCATCGACTACTGCAGCTGGCGGCGTGAACACACAACACCACACGAATCCGGCTTTATTGCACCATACCGTTACTGTTAACTACTAA
Protein Sequence: MNPEHHSINTGGGQPPGSSESQNQRVQNAQQQQQGNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQLLQDLGQTHASILNGDPNIILGHHSGQSQVTVSGTQQIPVSQIIATQSGQTHETLVTHNQHQDLTQQTTSNAQVTVSPTQATHQQVPNNRVEFIQHHNIDMGHHSQQHLLQQQLLASTRPEHANQQIQLTVSEDGIVTVVEPGAKLVDKDELHDAIKLPGDHTLTVQQLQQLVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAAEQLIVKDEKNAAKIEAAQYADIKDLKGIDLKSVGAMGMEGAVVKISGGTEHDLHGMYKVNVEDLSQLLAYHEVFGKLNADGQPQTKQILTEVDVEAGPSAGMSEAETSPSHNSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPVERHAKRLAQDKPYACTTCQKTFSRKEHLDNHVRSHTGETPYRCEYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHQCQMCGKKYTRKEHLMNHMRSHTNDTPFRCDLCGKSFTRKEHFSNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCTRAFSRKEHLNNHIRQHTGEVAQHACTYCTKTFNRKEHLVNHIRQHTGETPFKCTYCSRSFSRKEHLTNHVHLHTGETPHKCAYCTKTFSRKEHLTNHVRIHTGESPHKCEFCQKTFTRKEHLTNHLKQHTGDTPHTCKMCSKPFTRKEHLITHIRAHSCGQRPFSCGECGKTFPLKGNLLFHERSHSKNAGSRPYRCDFCPKEFLCKGHLSAHRRTHPEATEETAVTGATNADDCVDKCVKVEPDRPERKHEIRVTTESRPPETNVPPNQEQSTATVMQITTQQVRTASTTAAGGVNTQHHTNPALLHHTVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030446;
90% Identity: -
80% Identity: -