Sinc033215.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071642.1:6819953-6820366[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.3 1.4e+02 3.8 1.3 7 25 48 65 47 65 0.92 2 2 6e-07 0.00028 22.0 0.1 7 32 113 137 112 137 0.95
Sequence Information
- Coding Sequence
- ATGGCATCCCCACCGGTACGTGACGCGTGTCATAACACCCCGTGCGGGCACTGGTGGCCGTGCGCGGCGGCGCCAGCGTGCAGCTGGCCGCGCGGCATTATGGCATCCCCACGGTACGTGACGCGTGGCATAACACCCCGTGCGGCACTGGTGGCCGTGCGCGGCGGCGCCAGCGTGCAGCTGGCCGCGCGCATTATGGCATCCCCACCGGTACGTGACGCGTGTCATAACACCCCGTGCGGGCACTGGTGGCCGTGCGCGGCGGCGCCAGCGTGCAGCTGCCGCGCGGCATTATGGCATCCCCACCGGTACGTGACGCGTGGCATAACACCCGTGCGGGCACTGGTGGCCGTGCGCGGCGGCGCCAGCGTGCAGCTGGCCGCGCGGCATTATGGCATCCCCACCGGTACGTGA
- Protein Sequence
- MASPPVRDACHNTPCGHWWPCAAAPACSWPRGIMASPRYVTRGITPRAALVAVRGGASVQLAARIMASPPVRDACHNTPCGHWWPCAAAPACSCRAALWHPHRYVTRGITPVRALVAVRGGASVQLAARHYGIPTGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -