Sinc020077.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071634.1:4203283-4205133[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-09 1.5e-06 29.2 0.0 2 39 19 57 18 61 0.90 2 2 2.6 1.2e+03 0.7 0.1 2 12 426 436 425 438 0.89
Sequence Information
- Coding Sequence
- ATGCCACGAGACTATAAGAAGAAGATCGGGTCGCGGGACTATAAAAGATACGGAgaagaaaaaattaatgaaGCTCTTACTGATATTGTGGACGGTAAGAAGTCAATTCGAGCCGCGTCCGAAGCGTATAAAATTCCTTATGgaacattatataataagtataaaggACAACATATCAAAAAACCGGGTGCACAGACTACTTTTAGTGAAACGGAAGAGCTTGCCATACTGAAATCTGCAGCTAAGTGTGCTGAATGGGGTTATCCCTTGTCACTTTTAGACTTAAGATATATCGCAAAATCATATTTAGATAAACAAGGTCGTGTAGTAGAAaagttcaataataatattccaGGTGTAGAATGGGCCTATTCTATTTTAAAAAGACACCGGAATCAGTATTCTCAACGAATTTCAACAAACATCAAGAAGGCCCGTGCTAATGTTTCACACGAAACATTAACTGCATATTTTGATAATCTCAGTGCTGTCGTTGCAAATGTTCCTCCTAGCAATTTATTTAACTACGATGAATCTAACATCAGTGACGATCCAGGTAAGAAGTTGGGCATTTATAAAAGGGGTGTCAAGTACCCTGAGAAGATCATGAACCACTCTAAAAGCGCTACTACTGTTATGATATGTGGATCAGCCGACGGGACACTTTTGCCaccatatgtaatatataaaagtagtcaTCTATATAATACTTGGAAAGAAGGAGGCCCAAAAGGGGCACCATGTTGCAACAAAGTATGTTGTTCTGGAGGTACGAGATACAATCGAACTGCCAGTGGATGGATAGACGGGGTAACATTTCGAGACTGGTTTCGTGCTTGCTTCTTGCCACATGCTCAAATGTTGCCTGGACGCAAAATATTAATTGGTGACAATCTTTCATCTCACCTCGATGTTGATGTTCTGAATTTATGTGCAGAAAATGAAATAGATTTTGTATGTCTGGTACCTAATTCCACGCATTTAACCCAGCCGCTGGATGTAGGTTTTTTTAGACCTTTGAAGAGTGCCTGGCGAACTGTACTCACGAATTGGAAGATGCAAAATTCTAGGATAGCGTCAGTACCGAAAGATACCTTTCCGCGCCTTTTGAATAAAGCTTTGTTAAAGATGGACTCTGTAGTTCCGAAGCCCAATGCGCCATTTTCTGACGTAAATTCTGGAATTAAACGAAACCTCATGAGCAGTTTCAAAGCCACCGGTATACATCCGTTTAATCCGGATGCGGTAATGAAAAGGTTACCTTCACTGACAAATCCTGAATCAATTGAAGAAGCTGTTGATGCTGTTGAAAACGTCCTGACCGATTATTTGCGTAGCCAAAGATTTGATGCTGGTAATTCAGCAACCAGGAGAAAAACACGTCTACATTTAGCTCCTGGTGCAAGTGCTGCAGCAGCGGAATCAACCGCACAATTGGCAAATAGGGAAGAAGTTACCGAAAGCTCGAATTTACCACAAAGTGATGTTGCCTCTACAATAGTACCTACAGATACAGTAACCGAAGATAGTCTGAATTCTGATGAACCTGCATCAAGAGAAGATGTTGAATCCGAAATTTCATTACATCGATTTATATTAGCAAAATTTTATACCTCCAGAAATAAAAAGGTATATAAGTATGTTTGCCGCATCATAGAGACATCTCCTTTGATAGTACAAGGATTCAAGTCGTGGCAAACAAAAAACAGGTTTAAGAAAGTAATAGGAGACGTATCAGAAATTGATGAGAATGATGTAGTTGCCTTTTTGCCAAGACCAAAATTGATTCAGTCTGATAAAGACGTTGaaagtattgaatttaattacgacattgacattttagaaATGTAG
- Protein Sequence
- MPRDYKKKIGSRDYKRYGEEKINEALTDIVDGKKSIRAASEAYKIPYGTLYNKYKGQHIKKPGAQTTFSETEELAILKSAAKCAEWGYPLSLLDLRYIAKSYLDKQGRVVEKFNNNIPGVEWAYSILKRHRNQYSQRISTNIKKARANVSHETLTAYFDNLSAVVANVPPSNLFNYDESNISDDPGKKLGIYKRGVKYPEKIMNHSKSATTVMICGSADGTLLPPYVIYKSSHLYNTWKEGGPKGAPCCNKVCCSGGTRYNRTASGWIDGVTFRDWFRACFLPHAQMLPGRKILIGDNLSSHLDVDVLNLCAENEIDFVCLVPNSTHLTQPLDVGFFRPLKSAWRTVLTNWKMQNSRIASVPKDTFPRLLNKALLKMDSVVPKPNAPFSDVNSGIKRNLMSSFKATGIHPFNPDAVMKRLPSLTNPESIEEAVDAVENVLTDYLRSQRFDAGNSATRRKTRLHLAPGASAAAAESTAQLANREEVTESSNLPQSDVASTIVPTDTVTEDSLNSDEPASREDVESEISLHRFILAKFYTSRNKKVYKYVCRIIETSPLIVQGFKSWQTKNRFKKVIGDVSEIDENDVVAFLPRPKLIQSDKDVESIEFNYDIDILEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00660250;
- 90% Identity
- -
- 80% Identity
- -