Basic Information

Insect: Scirpophaga incertulas
Gene Symbol: POGK
Assembly: GCA_036419045.1
Location: JAYEAL010000108.1:76948-82715[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 8.2e-10 3.8e-07 31.2 0.0 1 42 510 551 510 554 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	8.2e-10	3.8e-07	31.2	0.0	1	42	510	551	510	554	0.92

Sequence Information

Coding Sequence: ATGTGCAAATGTCGTATTGTAATTTGGATCTCCTGTTTCTTGGGAGCCGTGTACCCTAATGAGAGATGCAAAGGAGGATCTCCCACTTCCCCCTTTGTGACTCCCGAGCACTATCCCACCCCGATGAACACCTCTTCCATAGTCCTTGCTGGAAGATCTCTGGGTCCCTGCTATGAATCTTCCTTTCCCCCAAGACCTGAATGTGAAAAATTTCTCCCTCATGACAAGAAGACGATGACTGGAGCCATCAATATCTGGAAGGTAGATGTCGAGGACGACTCCATGTGGGGGCTGATCCTCTGGAAGGAAAAGGTGGTCACCTCTGTGTGGCAAGGATTCTGGGGCGACACTGACAGCATAGTGGAGTCTGTGACACCTCTCCCCTGGGACGAGGATCCGTCCTCGGAGAATAAGACCTATCTTTCATCTTCAGCCCTGGATTCTGTAGAGAAACTTCGTTCATCGACCCCTTCCATCTTCCACTGGAGCTGGTTGAGGACCACAAAGACAGAATCTGTCGTACTATATGGGATGCGAGTGGCAGTTCTAAGGAACCCAGAGGGGGGATTCACAAAGCCTGAAGGACCATGTAAGAAAGTGACCTCCTCACACTATAAGACCAAATACAAAGGACTCTATGTATTCTTTTCATCCACTAGGAATCACTGTCCTTTGAAAATCTACCAAACAACCCCGGTTGTGATCACAGACCCCGGAGTCGAGGCTTTAGTTGTGTCGTCGAATGTGTCGCTCATGCAATTCTCACTTAGGTTGGAACCTAATTATATTCTGTGTAGAAAGAACTCAGTCCCAGTCTATAAGACACTGGGAGGTTATATGGTTACGCTGATTGACACAAATGGGGATGTGGTGGAATCAGTCGATCGGCTGGTCTCATCTAAAAGGAAGATTTGGAATAATAAAGCCCGGGCCAGACGCTCTCTCCATAAGAACATCATCCATGATTTATTACATTTCTTACACTCCCCCAAATCTTTGAATTCTAGATCAAGAAGAAGCACTCCCGCAGATGCAGAACCCTATTTTGATGAGTCCATGAGGAAGTCATTTGATTATTCATCATTCAGATACGAAATGGACTTCCTGATCAAATCTGAAAACAAGAATCTCGCACTCCTGCATCATCACATCTGTTTAATGAGGGAAGCCAAATGGTTGGCTCTGATGCCTCCCGATCTCCCTGACAAGGTCGCCGCTTATGTGGCCTCGGACATCCACGCCAAAGGGAATTTCTCCTCAGAGGAAAATCAGAGAGGATTTGTCCTTCCTCATTCTGTTATAGAGGATTCGGATTGGGGATGGGGGGGATGGGTCAGTTACTTGTTTCGCTCCAATTTTTTGACGATGGTCGGGGGGATTCTCGGGATCATCCTCCTTTTTCCTCAATTGATGATGTGTTGTCTGTCATGTTGTGCAAGAACAGAAGCTGTTGAACAGACCTCGTTCTTTAAGGTCCGAATGCCGAGAAAATACGTGAGGAAGCATACGGTCGTCAGAGGGCAGTGGActgaagaaaatttaattttggcaatggaaaaagtaaaaaaaggtgAAATATCAAAAAACGAAGCCCAGAGACTTTATGGAATACCAATTCGTACCTTGAGTAGGCGAATTATGACTGGCAATACCATTAAGTCTGGATTAGGTCCTCAAGCATCACTTGGGATGGAGAACGAAAAACGATTAGCTTCTTATATCAAACGTTTAGCTAATGCTGGTTTTGCTCCTGATAGGAATACTATTCGTTCTCTTGCTTATCAGTTTGCTGAGAAACTtggaataaaacataaattttgcaaagaaaaagaaaaggcCGGCCAACATTGGCTGTCATCTTTTCTAGAGAGAAACAAGGATATCTCAATACGTCAAGCAGAAGGTTTATCAGTTGCAAGAGCTCAAGGAATGAACAGAGAAGAAGTGGGTGCATTTTTTAAACTCCTTGAAGAAGAAatggtaaaatataatttaacatgtaaacctgaaaatatttttaatgttgacGAGTCTGGGatccaattaataaataaacctgGCAAAGTATTGGCGGCTGAAGGAACAAAGGACGTTCATGTGATCACACCTCGAGAAAAAGGAGAAACAATTTCTTTGGTTGCATGTTGCAGTGCGGAAGGTCGTTTTCTGCCTCCAGTATTAATAATGAAAGGAGTTAATAAAAAGGCCGAATTTTCTGATGGGTTGCCTAATGGGTCTGACGTCTACATGAATAAAAAGTCATCTTATATTAATTCTGAACTCTTTTTGCGTTGGTTCAAGGAACATTTTCTTCCCAAGAAACCAAAAGAAGGTAAAACAATTCTGATTTTAGACGGTCACACTTCACACTATTCAATTGATCTATTAAATGTAGCAAATGAAAATGATGTCATACTAATATGCTTGCCAAGTCACACAACACAAGCTCTTCAACCTCTTGATCGCAGTTTCTTCAAACCTCTGAAAACCTTCTATAATCAGGAATGCAATGCATGGAtgttgagaaataaaaatagaactttAACAAGACTACACTACtag
Protein Sequence: MCKCRIVIWISCFLGAVYPNERCKGGSPTSPFVTPEHYPTPMNTSSIVLAGRSLGPCYESSFPPRPECEKFLPHDKKTMTGAINIWKVDVEDDSMWGLILWKEKVVTSVWQGFWGDTDSIVESVTPLPWDEDPSSENKTYLSSSALDSVEKLRSSTPSIFHWSWLRTTKTESVVLYGMRVAVLRNPEGGFTKPEGPCKKVTSSHYKTKYKGLYVFFSSTRNHCPLKIYQTTPVVITDPGVEALVVSSNVSLMQFSLRLEPNYILCRKNSVPVYKTLGGYMVTLIDTNGDVVESVDRLVSSKRKIWNNKARARRSLHKNIIHDLLHFLHSPKSLNSRSRRSTPADAEPYFDESMRKSFDYSSFRYEMDFLIKSENKNLALLHHHICLMREAKWLALMPPDLPDKVAAYVASDIHAKGNFSSEENQRGFVLPHSVIEDSDWGWGGWVSYLFRSNFLTMVGGILGIILLFPQLMMCCLSCCARTEAVEQTSFFKVRMPRKYVRKHTVVRGQWTEENLILAMEKVKKGEISKNEAQRLYGIPIRTLSRRIMTGNTIKSGLGPQASLGMENEKRLASYIKRLANAGFAPDRNTIRSLAYQFAEKLGIKHKFCKEKEKAGQHWLSSFLERNKDISIRQAEGLSVARAQGMNREEVGAFFKLLEEEMVKYNLTCKPENIFNVDESGIQLINKPGKVLAAEGTKDVHVITPREKGETISLVACCSAEGRFLPPVLIMKGVNKKAEFSDGLPNGSDVYMNKKSSYINSELFLRWFKEHFLPKKPKEGKTILILDGHTSHYSIDLLNVANENDVILICLPSHTTQALQPLDRSFFKPLKTFYNQECNAWMLRNKNRTLTRLHY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -