Sinc020823.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071634.1:16433991-16436237[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-10 1.8e-07 32.2 0.1 1 39 13 51 13 58 0.84
Sequence Information
- Coding Sequence
- atggattcaATCAATAAGAAGCGACGTTGTGAATGGACTGAGCAACAGCTCAAATCAGCTAtagaagcagtgaaaaaatgtcgTATGTCACAACGAAAGGCAGCAGCTACTTTTAGTATCCCAAGGAGAACGCTAAGAAATCACCTAAAATCTGGCAGCGAGGAAAAGATGACTGGACGACCAACTACACTAACTAATGACCAAGAAAAAGATTTGGCAAGAAGAATAATAAGACTGGCTCAAGTAGGCGTACCGTTGACCCGCAAGATTGTTAGAAAGCAAgcgtatttattttgtaaggcGCATAATATACCAAATTCCTTTAATGACAACAGATGTATTGCTGGTAGAAAATGGctgaataattttttgaaacGAAACTCTGAAATTTCTGTGCGTAAAGCACAGTTCATGAACTCTGCAAGGGCCCAAAAATTGAATAAGCACATTGTGCAACAACATTTCGcggcaattaaaaaattgtatgatgAATTGGATATTCCTACACATCCCGAACGTTTATACAATGTTGATGAAAAGGGCTGTCGACTAACCTTGCACCACCAACAACAGGTTCTGGCTCAAAAGGGGAGCAAGAGAGTCCATTTTATCGCACAGGAGCACGCGGAAAATGTCACTGTTGCCATGTGTGTCAACGCTGCAGGTAATTCAGTTCCACCTATGATTATTTTCAAAGGTAAAAGATTAAGGCCGGAATTTAACGACAATTTACCTGATGGTTCTATTGTCAGAATGGCACAAAAAGGTAGCATGACTACTGAATTGTTTATTGATTTCATTAATCATCTTGGCAACTATAAGTCACCTGGGAAATGTTTGCTTGTTTTTGATGGAGCTGCTTCGCATTTAGATGCTAGAATTGTGGATGCCGcagatgaaaataatattgtattatattgtttacCATCAAACACCACCCATGAGTTACAGCCCTTAGATAAATCAGTCAACAAATCATATGAACACCATTGGGATGAAGAAGTTTTGTTATACGCCTATCGCCACCCAGACCGCAAGCTCACGAAGGCTAGATTCAACAAAATTTTTTCACAGGTATGGCCTAAGTGCGtaactcaaaataatataaagaacggGTTTAGAGCTACTGGGCTCCATCCTTACAATCCAAACGCAATTCCCGAGGACGCTTTTGCACCTTCTATCCTTACTCAGCGGCCCATCCTGCATGAAACTGCTTCTACGAGTACATCAGCTACTTTTGCAGATCCAGCAATATTTCACAGAAATGACTCTCACACGGATTGTGATGAAAGCTTTCGCATGTCGCGTACCTATGTACCTGATTGTTGTCCTGATGTAAGAATATTACAACCTTTACCTCAGCCTTTGTCTGGATATTTAACTCGCCCTCCTGCTACTTTACAGCGAcagaaactaaataaattggTTGACTATAGTTCGTCTTCTGAATCTACTACTGAAAATGTTGTAGTAGAACCTAAAGGAACAGACATGTATGGCAGGATGTCACAATTTCATTCCCCAATTCCAAGCACGTCTGGGTTGGGACAGAATGTTGTACTAAGACCTGTTATTAATTCTTCTACATCAGGCTCAGACGacgaaaatattgatataaacacattacaaaaatattctcAATATTCTGCCAGGAACTGTAAGATTTATTCGTCATCGGAATCAgaagaaaatatattctatCAATCGGATGATCATTTTGATGTTTCTGACGATGTACCACTATCAAATTTAAAActaggtaataaacaaacacaaaaaaaatcttcgTTTCACGAATTTATGCCGACGCCTAACTATACAACAATCAAAAGTACACCAAGGCGAAAAGCTTTAAATTACATTGGTCAAAGGGTAACCAAGGATTTGTTTAATGTTGTtcaagaaaagaaagaaaaggaatcaaaaacaacaaaaacaaagaataaaaaaagtgaatgCTCAAGAgatatacaaaagaaaaaaaattataaaggagACGAGAAAGCAAAGAGCGGACAACGAAAAGGAAAAGAAGTCAATGTAAAAAACAGAGGCACGAAGAAAAAAGAGAGTAGCACAAAAACTAATGAAAACGATGATGAAAGTTGGTATTGCCAAGCTTGTAAAGCTGAGCGAGTCACAAACATGCGACGATGTGTTGGTTGTTCTTTGTGGTACCACGAGGAATGTGTTGGGCTAACTGAAAACGACATAGAGGAGTTCTTATGTCCAGAATGCAACTAA
- Protein Sequence
- MDSINKKRRCEWTEQQLKSAIEAVKKCRMSQRKAAATFSIPRRTLRNHLKSGSEEKMTGRPTTLTNDQEKDLARRIIRLAQVGVPLTRKIVRKQAYLFCKAHNIPNSFNDNRCIAGRKWLNNFLKRNSEISVRKAQFMNSARAQKLNKHIVQQHFAAIKKLYDELDIPTHPERLYNVDEKGCRLTLHHQQQVLAQKGSKRVHFIAQEHAENVTVAMCVNAAGNSVPPMIIFKGKRLRPEFNDNLPDGSIVRMAQKGSMTTELFIDFINHLGNYKSPGKCLLVFDGAASHLDARIVDAADENNIVLYCLPSNTTHELQPLDKSVNKSYEHHWDEEVLLYAYRHPDRKLTKARFNKIFSQVWPKCVTQNNIKNGFRATGLHPYNPNAIPEDAFAPSILTQRPILHETASTSTSATFADPAIFHRNDSHTDCDESFRMSRTYVPDCCPDVRILQPLPQPLSGYLTRPPATLQRQKLNKLVDYSSSSESTTENVVVEPKGTDMYGRMSQFHSPIPSTSGLGQNVVLRPVINSSTSGSDDENIDINTLQKYSQYSARNCKIYSSSESEENIFYQSDDHFDVSDDVPLSNLKLGNKQTQKKSSFHEFMPTPNYTTIKSTPRRKALNYIGQRVTKDLFNVVQEKKEKESKTTKTKNKKSECSRDIQKKKNYKGDEKAKSGQRKGKEVNVKNRGTKKKESSTKTNENDDESWYCQACKAERVTNMRRCVGCSLWYHEECVGLTENDIEEFLCPECN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01333697;
- 90% Identity
- iTF_01333703;
- 80% Identity
- iTF_01333703;