Sinc001259.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071626.1:20953836-20954687[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-10 9.4e-08 33.1 0.1 3 37 17 51 15 60 0.95
Sequence Information
- Coding Sequence
- ATGGTACGAACTTACAAAAAGAAAAGTTCTAGAGGCAGTTGGTCTGTAGAAAACATGAAACACGCAATTGATGCAGTTTTAAGCAAATCAGCAGGTTACAGAAAAGCAGCTCAAATGCATGGTGTTCCACAAACAACATTGGAGCGTCACGTCGCAAAAATAAGGAAGGGCGAGGTATCTCTTAACTCGACTCCAGGTAACTTTAAGCCTGTATTTTCCAAACAAGAAGAAGAAGAGCTAGTTAGGTATGTAAAAGATATGGAGAAGCGATTATTTGGATTGACAACTGTCGTCCTACGAAAACTAGCCTATCAGCTCGCTGAAAAAAATGGTAAAACTCACAATTTTAACCATGTTAAAAAGATTGCTGGCATAGATTGGTTAAAAGGCTTTATGAAACGTCACCCGGATTTATCAATTCGAAGACCTGAAGCTACATCGGCAGCGCGAGCGATGGGTTTTAATAAAGTAGCcgtgaataaattttattctttgctAGGGGAAGTATatgacaaatataatttaacgccggatagaatatataattgtgaCGAGACTGGAATATCATGCGTCTCCAAAACAAAGAGCAAAATCATTGCTGAAAAAGGCAGAAAACAAGTAGGCTCCCTTTCTTCTGCAGAAAGAGGGCAGACAGTTACCGTCGAGATATGTGTCAATGCAGCCGGAACTTATATGCCTCCCATGCTAATATTTCCTCGGCAGAGAATGAAGCAGGAGTTACTGGATCGAGCTCCTCCAGGGACGACGGCGGAATGCAACGCTCGAGGCTGGATGACAACTGAAACCTTCATGAGTTGGTTCCAACGATTCGTTATATTTTCTGGGGCCTAA
- Protein Sequence
- MVRTYKKKSSRGSWSVENMKHAIDAVLSKSAGYRKAAQMHGVPQTTLERHVAKIRKGEVSLNSTPGNFKPVFSKQEEEELVRYVKDMEKRLFGLTTVVLRKLAYQLAEKNGKTHNFNHVKKIAGIDWLKGFMKRHPDLSIRRPEATSAARAMGFNKVAVNKFYSLLGEVYDKYNLTPDRIYNCDETGISCVSKTKSKIIAEKGRKQVGSLSSAERGQTVTVEICVNAAGTYMPPMLIFPRQRMKQELLDRAPPGTTAECNARGWMTTETFMSWFQRFVIFSGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00256819;
- 90% Identity
- iTF_01430690;
- 80% Identity
- -