Sinc042278.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- JAYEAL010000193.1:16228-18222[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-10 6.6e-08 33.6 0.3 2 39 10 47 9 53 0.94
Sequence Information
- Coding Sequence
- ATGCCTCCAAAGAGAGCTCAGTGGGCAGAAGAAAATTTACGGGCCGCTTTGGCGGCAATAGAACGAGGGCAGCTGACGCAAAGAGCTGCAGCTGAACGTCACAACATTCCAAGACGAACTCTCCGAaatcatataaaatcaaaaagtattattaagcGCTTAGGTCGTAATTCCATACTGACTATAGACCAAGAAAAAGATCTTGTACAACGCATTATACGATTTGCTAATATTGGTGTACCTATTACACCAAAAATCATACGGAgacaagcatttttattttgcgAGAAGCATGAAATTAAGCACAATTTCAATAAAGACTGTGGCACTGCGGGCAAAGACTGGcttaaaatgtttttgaaaagGAACCCAGAAATTTCCAAAAGAAAAGCCCAGTTTATGAATCCAGGCAGAGCACAAAAATTAAACCGTCCTATAGTTGTTCAGCATTTCCAAGAAGTGAAAGACCTATATGAGGAATTAGACATTCTACAGAATCCGCAATGCCTCTATAATATGGATGAAAAGGGGTGTAGACTCACTATTCATCATcaacaaattgttttggcgCAAAAAGGAGCTCGTCGAGTCCATTTGATTGCACCTGAGCACGCCGAAAATGTTACCGTAGCAATATGTGTTAATGCTGTTGGTACCGCTATCCCACCAATGATCATATTTAAAGGCCAAAGACAAAAACCAGAATATAGTGATAACTTACCAGCTGGATCTCTCGTAAAGATGGCTCCAAAAGGAAGTATGACCAcggagttatttattaatttcatcaagcatCTGGGGAAGTATAAAACACAGGGGaaagttttgttaatttttgatGGAGCGTCCTCGCACCTGGATTATACAATTGTTGAAGAAGCAGATAAGCATGATATTGTGCTTTATTGTTTACCCAGTAACACAACCCATGAACTTCAACCCCTCGATAAATCCGTCAATAAGTCTTTTGAGCATCACTGGGATCAAGAAGCTATGACATATATGTATCAAAATCCTGACAGACGCTTGACGAAATCGAACTTCAACAAAATATTCTCAAAAGCTTGGTCGAAGGCATTGattcatgaaaatataataaatggatTCAGAGCTACTGGATTGTTTCCATTTAACCCTGATGTATTACCAGATGAAGCATTTGCACCAGCGATCTTGACCGAACATCCTCTTCCACAAACTTCAACTATTATTGAGGCTAACTTAGAGTACACTGAGGTAACGTCACGTTATGACACTGTTTCACCAACAATACTTAACAACCAAGAATGTACTATTGCTGACACTGTTACCCCAGAAAAGCAAATTGGTGTAAGGGCTTTAACTGATATTGCTACATCAAACTTTCCTGTGAATGTACCACAaagcaaaaatataaattgcaatCTTTTAACTCCATCGCCAAAACCATCAACATCTGGTATTGTGACAAAACATTCTCTTATTCTAAATTCAGACTCAGAGACTGATAATGAGCCTGACGCTGTACAGAAGATGTTGAATAGAAATTATCAAACCagaatcaatatatataccttcGAAGATGACTCTGACGATGATATTCCGCTAGCCACTCTTAAAACAAAGGAAACTAAATCCCCTTTTCAAGAACTTATGCCAACTCCAAACTATGCTGTAAAAATCAAAGACAAACCAAGAAGAAAAGCCATCAATTATAGGGGTCAACGGATTACTAGGGATTTTAAAAAACGAGAAGAGCTCAAAGAAAATGAGATCATAAAggtgaaaaaatcaaaaaaagccAATCAGAAAACTATAGATCGTAAGAATAGAAAAGATAGCAGTAAGGTTAACAAGTCAAAAATAATTGAATCTGAATGGTTCTGCCATGCTTGCAAAGAAGGACGTGTTTCGGACATGCGGCAATGTGTCCAATGTTTTAAATGGTACCATGAAGAGTGTGTCGGACTCTCAACCGACGATAAAGATATGTTTTATTGCTGTGACTATGtttaa
- Protein Sequence
- MPPKRAQWAEENLRAALAAIERGQLTQRAAAERHNIPRRTLRNHIKSKSIIKRLGRNSILTIDQEKDLVQRIIRFANIGVPITPKIIRRQAFLFCEKHEIKHNFNKDCGTAGKDWLKMFLKRNPEISKRKAQFMNPGRAQKLNRPIVVQHFQEVKDLYEELDILQNPQCLYNMDEKGCRLTIHHQQIVLAQKGARRVHLIAPEHAENVTVAICVNAVGTAIPPMIIFKGQRQKPEYSDNLPAGSLVKMAPKGSMTTELFINFIKHLGKYKTQGKVLLIFDGASSHLDYTIVEEADKHDIVLYCLPSNTTHELQPLDKSVNKSFEHHWDQEAMTYMYQNPDRRLTKSNFNKIFSKAWSKALIHENIINGFRATGLFPFNPDVLPDEAFAPAILTEHPLPQTSTIIEANLEYTEVTSRYDTVSPTILNNQECTIADTVTPEKQIGVRALTDIATSNFPVNVPQSKNINCNLLTPSPKPSTSGIVTKHSLILNSDSETDNEPDAVQKMLNRNYQTRINIYTFEDDSDDDIPLATLKTKETKSPFQELMPTPNYAVKIKDKPRRKAINYRGQRITRDFKKREELKENEIIKVKKSKKANQKTIDRKNRKDSSKVNKSKIIESEWFCHACKEGRVSDMRQCVQCFKWYHEECVGLSTDDKDMFYCCDYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00709118;
- 90% Identity
- iTF_00736549;
- 80% Identity
- -