Sinc000921.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- clz9
- Assembly
- GCA_036419045.1
- Location
- CM071626.1:16250898-16252568[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.2e-11 3.8e-08 34.4 0.1 4 40 18 57 15 62 0.84
Sequence Information
- Coding Sequence
- atgatatataaatacaccAGGCGTACGTTGAGGGCTTCCTGGTCGGAACGCACGATGCAGGAGGCTATAAACGAAgccagaaaaacaaaaaaacagaaaaacagCATCAAAAGGGCTTCAGATAAATATGGAATACCTTACAGTACATTACAGCGACGTGTCAAGACAGGTTCATGTACTAAGAAACTGGGAAGGTTCACGCCTCTTTTTACGGAATCCGAAGAAGTTGAATTAGTGAAACATTTAAGAGAGCTAGATGCACTGTTTTATGGACTCATCAAAACAGAGTTCTTAAGATTAGCTGGTGAGTTTGCCAAACGCAAAAATAAATGTTCGccgtttaaaaataatgttgcagGCAAACAATGGTTTACAAACTTTAAGAAGCGTCACCCAGACATTGTGTTGAGGACTCCTGAATCTACATCTATTGCTAGGCTGCAAGCATTTAATAAGCCTGCTGTAAATAGATTTTACGATTTACTAGAAAATATCACAGAAAAAGAACATATCCGACCAGATATGATATTTAACATGGACGAAACTGGCGTTAGAACCTCATCCACGAAACCCCCTAAGGTGCTGTCAGTATATGGGAAAAAGCAAGTAGGGACGGTTAGCAGCTTAGAAAAAGGAACACTCACAACAATTATCTGCTGCTGCAGTGCTACTGGAAATTTTGCACCACCGcccttctttatttttaaacgcaaAAGGATTCAAGCTCGCTTACTTGATGGTGCCATGCAAGGATGTGAAGCTTCCGTTTCTGATAGTGGCTGGATCACAAGTGAAATTTTTTTGGAGTGGCTTAGAGTTTTTGTCAGCTGGGTCAGACTAACTAAAAATTGCAAAGCTTTGCTAATTTTAGACAATCATGAGTCGCATAAGTATTATCCTGCTCTTGAATATGCTTCGGTCaacaacattatatttttgacaataccACCCCATACATCCCATAAGTTACAGCCACTTGACGTGGCTGTATATTCACCCTTCAAgactttttttgaaattgaaattaataaatttcagaaAGCTTACCCCGGTCGAATAATTGGACAATATGATATTGGGAAACTAGTGACTCAAGCTTATTTGAAAGCAGGCACACCACAAAACGCTTTAAGTGGATTACGCGCGGCTGGAATCTGCCCATTCGATAGACATGCTATTTCTGAAGAGTATTTCGCACCTTCTGCTGTTTATAATCGAGACCAGGAAACACACTCCGAAAACCGGGCTCAGGGCGAAAATCCAAGTATTTCCGAATGTGAAAATGTTGAACAGCAGTCGAAAAATATCTCTGAGCCAGACTCAGTAGAGATCACAAGCACTGCTTGTGATCTTTTTCCTGAATTGAATATGCCTAATATACATCCAATGGATGGAAAAACTACACCATCAAATGACATACTTCATGATTCTAATATTCTTCAGGAAATACATCCGTTGCCTCAGGGCGTTGAAAAAAAGACAACCAGATGTAGAAAGGTACAAAAATCTGAGGTGTTAACAAGTACGCCCatcaacaaaaagaaaaatttgaaaaatcggCGATTAAGAAGGAGAATATGCAGACAAAGAGTCGAAAAGCAAGTGACAAAGAAAATCAAAAGGCAAAACCTTCAACATCAAACATTTCAAAGCGACAGAAAAAGAATATAA
- Protein Sequence
- MIYKYTRRTLRASWSERTMQEAINEARKTKKQKNSIKRASDKYGIPYSTLQRRVKTGSCTKKLGRFTPLFTESEEVELVKHLRELDALFYGLIKTEFLRLAGEFAKRKNKCSPFKNNVAGKQWFTNFKKRHPDIVLRTPESTSIARLQAFNKPAVNRFYDLLENITEKEHIRPDMIFNMDETGVRTSSTKPPKVLSVYGKKQVGTVSSLEKGTLTTIICCCSATGNFAPPPFFIFKRKRIQARLLDGAMQGCEASVSDSGWITSEIFLEWLRVFVSWVRLTKNCKALLILDNHESHKYYPALEYASVNNIIFLTIPPHTSHKLQPLDVAVYSPFKTFFEIEINKFQKAYPGRIIGQYDIGKLVTQAYLKAGTPQNALSGLRAAGICPFDRHAISEEYFAPSAVYNRDQETHSENRAQGENPSISECENVEQQSKNISEPDSVEITSTACDLFPELNMPNIHPMDGKTTPSNDILHDSNILQEIHPLPQGVEKKTTRCRKVQKSEVLTSTPINKKKNLKNRRLRRRICRQRVEKQVTKKIKRQNLQHQTFQSDRKRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01026057;
- 90% Identity
- iTF_01333723;
- 80% Identity
- -