Sinc017088.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- clz9
- Assembly
- GCA_036419045.1
- Location
- CM071632.1:23783859-23786399[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-10 8e-08 33.3 0.0 3 39 17 53 16 58 0.90 2 2 0.53 2.4e+02 3.0 0.0 20 39 748 767 747 769 0.90
Sequence Information
- Coding Sequence
- ATGGTGCGTAATTATAAAAGGAAAACGGAAAAGGCATCATACCCTAAAGAAAAACTACAAGACGCAGTTCGAGCTGTTCGAAATGGTGAATTAAGTGGGTACAAAGCTGCCCGTTTATATAATATTCCCAGAATGACCATAATGGATCATGTCAATAAAACGTTAAAATCTACTACTCTTGGGCGGTGTACGGCTCTTTCGTCACAGGTCGAAAACAAACTTGCTACACATTTGCATACAATGGAGAAACATGGCTTCGGACTGACAAGAGAGGAGGTAATTGAAGTAGTTGGGgattatataaacttaaataaaatatcaacgcCTTTTAAAAATGGGATACCAGGAAAAGAATGGTTTAAAGGTTTTAAAAGTCGTaataatttatctgtcaaaaaaCCTCAGGCTGTCGAATATGCACGAAAAAAGGCCGTCGacccttatattatatatccatattttgatttattacaaGAAACAATCGAAGGATTGGGCCTAGAGAACAAACCGTCAGCTATCTGGAATTTGGATGAAACAAGTTTTTCAAAAGACCCATCTAAAACCAAAATAGTAGGTCGAAAAGGCCACGCAGCAACTAGAACTATTGCTACACCCGGCAGAGACAACACTACTGTTCTGCTTGCTGCTAATGCTATCGGGGAAAAAATTCCACCACTCATAATTTATAAAGGGAAAAACGTTTGGGATGCGTGGATTTCCCCCGAAGCCTATACAAATACGACATACGCTGCCTCTCCAAATGGGTGGATGGAGacagatatttttgaaaattattttaaaaaatcatttataccTGCAGTTGGAGATCAACGTCCTATTTTGCTCATATACGATGGCCACTCAACACACGTAGGACTTAATATAATGGAAGAAGcatacaaagaaaatatcacTATACTTAAACTACCACCTCATACGAGTCACGTATTGCAACCGTTAGACATAGCAGTAATGAAATCTTTTAAAGATCGTTGGGACCCTTTATTAGTCAAATGGCAGAGACTAAATATTGGAGTTCCTTTGCCGAAGAGTGAGTTTGCTCGGCTAATAGGTATTGTATGGGCTCAAATTGATCGTGATGTATTACGTAGTGGATTCAGAAAGGCCGGAATATATCCGTGCAATCGTAATGTAATAGAGGAAAAACAATTCGACTCTTTAAAATTGGAACAATGGAAGCAGTTTACGAGTACCTCAAATGAACCATTACGTAATAGAAATTCCACTGTACTACAGATGGAAGATCTACCACCTGCTACTATTCACAAACAGCTTGCAAAAAATAGTCCTAGAAATTTGCTTTCAATAGTCctacattttattatgaaaaattttgaCTATGTAGAGAGGAATACAATAGTTAAAGGCAGGAATGATCAAGTACAAATAACGGCAGACATGAACACAGAGGttataattaacaaaactaaCTGTACTAATGACAAAAAGGAACAGGTGAAGATAGGTACGAATACAGAAGCCGTAATATACGCTAATGCTGATCCCAGTCAAGaagaacatataaataaaacttattctaTTGATTTTGAAGACTTACTACTAAGAAAAGTAAAAAGAAGTGAGATCACAAAAACAACACGACGCAAAATTGCTCCTGGAGCTGAAGTGATTACTCATATTGAtgtgataaaacaaaaaagaataggccaaaaaataataaaaacgggaaaaagcaataaaaaaataaaagtgacaCCAGTTTCCTCTACAAGTGCAAAGAACGTTACATATTTAGGTGAGATATCCCAAAATGATAGTCAGTGTACTCCGTTCGTCGTGAATGCACCAGAAGATGTTCCTATTTGTTTACGAGATAAAATACCAGAAGCTCGTAAAATCAAAGTTTTATCGAACATCCTAATTAAACCACCTAAGCGTAATGACAAAAAAGGagctaataaagaaaataccgTAAGCAAGAGAATATCTTCTAAAATCATAAGTGGAACGAAAGAAGATAAAAGACGCGTACGATCATCAGGTAGTTCTACAAGTGTCTCGGGTACAATAAGCATTCACAGTGATTCAGACATATTGGATGCTAATACTGATGAAGAACAGGATCTTGATTTTACAAATAGAAATGTCAAACAAAGTAAGgacattaaaatgtttaatacagCAGAGAAAAACCAGAAATCGTTTAACTTAATAACTAGAAGTAACGAAAAGAACAATCTCAGAAAAAATCCCCTCAAGCAGAAGTTGGCTAATAAATATAGCGTTGATGACCAAGTACTTGTACGatactataaaaacaaaaaatggtaCTTTTATGTGGGAgtcattgaaaatataattctaaaccGCTCTTATGGCATTCGATTTTACCaaactattaaaaaaccaaATTTACTGTTTAAGTTAACTAAGAAAATTGATCGTGATCCTGAGGTCCCTGaaatactaattataaaaaaaattgatttgattCAAAATTCGGAAAAATCAAATGTATATGAACTCAAAAATGAGGATGACTCAGTTTACTTTTCATAG
- Protein Sequence
- MVRNYKRKTEKASYPKEKLQDAVRAVRNGELSGYKAARLYNIPRMTIMDHVNKTLKSTTLGRCTALSSQVENKLATHLHTMEKHGFGLTREEVIEVVGDYINLNKISTPFKNGIPGKEWFKGFKSRNNLSVKKPQAVEYARKKAVDPYIIYPYFDLLQETIEGLGLENKPSAIWNLDETSFSKDPSKTKIVGRKGHAATRTIATPGRDNTTVLLAANAIGEKIPPLIIYKGKNVWDAWISPEAYTNTTYAASPNGWMETDIFENYFKKSFIPAVGDQRPILLIYDGHSTHVGLNIMEEAYKENITILKLPPHTSHVLQPLDIAVMKSFKDRWDPLLVKWQRLNIGVPLPKSEFARLIGIVWAQIDRDVLRSGFRKAGIYPCNRNVIEEKQFDSLKLEQWKQFTSTSNEPLRNRNSTVLQMEDLPPATIHKQLAKNSPRNLLSIVLHFIMKNFDYVERNTIVKGRNDQVQITADMNTEVIINKTNCTNDKKEQVKIGTNTEAVIYANADPSQEEHINKTYSIDFEDLLLRKVKRSEITKTTRRKIAPGAEVITHIDVIKQKRIGQKIIKTGKSNKKIKVTPVSSTSAKNVTYLGEISQNDSQCTPFVVNAPEDVPICLRDKIPEARKIKVLSNILIKPPKRNDKKGANKENTVSKRISSKIISGTKEDKRRVRSSGSSTSVSGTISIHSDSDILDANTDEEQDLDFTNRNVKQSKDIKMFNTAEKNQKSFNLITRSNEKNNLRKNPLKQKLANKYSVDDQVLVRYYKNKKWYFYVGVIENIILNRSYGIRFYQTIKKPNLLFKLTKKIDRDPEVPEILIIKKIDLIQNSEKSNVYELKNEDDSVYFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01333671;
- 90% Identity
- iTF_01333669;
- 80% Identity
- -