Sinc046249.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- JAYEAL010001190.1:90272-91333[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-12 1.4e-09 39.0 0.1 1 37 15 52 15 55 0.92
Sequence Information
- Coding Sequence
- aTGGTCCGTGACTACAAACGCACGACAGACAGAGGGTCGTGGTCCGAAGAATCCATGCGGGAAGCAATTCATGCGGTTTTGGATGAAAAAATGGGTTATTATAAAGCAGCCAAGCAATTTGATGTGCCACAGACGACATTAGAGAGAAAAGTTAAGGCTGCTCGTGCTTGTCCAGTTTTGAGCGAAATATCTGAGGTAAACTTACCCCTACCAATTAAAGTACCATTGGGTCCTAGGCTGCCTGTATTTTCTGTGTCTGAAGAAAATGAGCTTTGTGCCTATTTATTAGAAATGGAAGAAAGGTTATATGGACTTACGGTTAAAGATCTAAGGGCATTAGTATACCAGttagcaattaaaaataataagcctAATCCATTCAACGCTAAGAAAAAAGAAGCTGGTAGAGAGTGGACAAATGGCTTCCTAAAACGACACCCAGAGCTTTCAATTAGAAAGCCTGAAAATACTTCTGCTGCCAGAGCATCTGGTTTTAACAAAGTTGCAGTCGAAAAATTCTTCAATTTCCCCCGCAACGCGTACGATGAGCACCAACTAACTCCTGATCGAATATACAACTGTGACGAAACGGGGGTTACTGCTGTGCCAAAGACAAATTCAAAGATAATCGCTAAAAGAGGACGGAAACAGATTGGAGTCATAGTTTCAGCAGAACGAGGACAGAAAGTAACGGTCGAGATATGCTTCAGTGTAGCTGGAAACTACATGCCACCTATGCTTATCTTTCCAAGAAAAAGGATGAATCCAAAGCTGATGGTGAATTCACAAGCTGGTGCTTGGGGAACATGTAGTGATTCGGGATGGATTACTTCCGAGCTGTTCCTCCAATGGTTTAAGAGATTTGTGATTTTCAGTGGAGCATCTAAAGAGAGACCCGTACTTCTTTTACTAGATGGGCACAGCACTCACACTCAGAATATTGACCTGATCAATGAAGCCAGAGCTCATGGTGTTATAATCTTGTGTTTTCCTCCGCACACGACACACCGTTTACAAGTAGCGAATGTTGCGTTCATGCGACCATTAAGTGTTTTTTTATGA
- Protein Sequence
- MVRDYKRTTDRGSWSEESMREAIHAVLDEKMGYYKAAKQFDVPQTTLERKVKAARACPVLSEISEVNLPLPIKVPLGPRLPVFSVSEENELCAYLLEMEERLYGLTVKDLRALVYQLAIKNNKPNPFNAKKKEAGREWTNGFLKRHPELSIRKPENTSAARASGFNKVAVEKFFNFPRNAYDEHQLTPDRIYNCDETGVTAVPKTNSKIIAKRGRKQIGVIVSAERGQKVTVEICFSVAGNYMPPMLIFPRKRMNPKLMVNSQAGAWGTCSDSGWITSELFLQWFKRFVIFSGASKERPVLLLLDGHSTHTQNIDLINEARAHGVIILCFPPHTTHRLQVANVAFMRPLSVFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628184;
- 90% Identity
- iTF_00851694;
- 80% Identity
- -