Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 6.9e-11 3.2e-08 34.6 0.0 4 39 171 207 168 211 0.90

2 3 8e-11 3.7e-08 34.4 0.2 2 39 223 260 222 263 0.92

3 3 1.2e-08 5.6e-06 27.4 0.1 2 32 278 307 277 307 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	6.9e-11	3.2e-08	34.6	0.0	4	39	171	207	168	211	0.90
2	3	8e-11	3.7e-08	34.4	0.2	2	39	223	260	222	263	0.92
3	3	1.2e-08	5.6e-06	27.4	0.1	2	32	278	307	277	307	0.94

Coding Sequence: ATGCCGGGGCATGGCGCGAGCGTCAAGCGTGAACCGCTGGCGGAAGGAAGTGAACCGAGCGCGCCGTTCACTAACGGATATCTTATGAATCAGCTTCCTTCGCTTGGTAACTGTCCAGTGAAAATAGAAAATGATTGTATGCAAGATATCGACGATCGGTCTGCTTTGCTGTTGGACCATCTACAGAGTGGATTGGAAGAGCTGGCACTTCCTGCGCCAGCGGGGCCCGCGGCTACGCCTGTCTGCGTACAGCAGGAGGGGCGTGAGTCACCGCCCGCCACGCTGGAGAGCCTGCAGCCAGCACCGCACACGAGCAACGGCACCACATTGTTAGACCGGCACTTCGCGATGCTGAGCGCTAATGAAGTGGCAGAGTCTTGTGACTTCATGCCGCTGCTGGCTGTTAAGGACGAGCCTCTCTCCGAAGGAGAGACGCAGCAGACGAGTGGCGACGAGGCGAGCGAGGGCAGCGGTGAGCGACGCGGCAGCCCCAAGAGCTGGACACAGCGCGACATGGAGCTCGCGCTCGCCGCCCTGCGCACTCACAACATGAGCCTCACCAAGGCATCATCGACGTATGGTATCCCGTCAACCACGCTATGGCAGCGTGCGCACCGATTGGGCATCGACACGCCGAAGAAGGAGGGATCATCCAAGTCTTGGAGTGAGGCAGACCTCAAGGGCGCCCTGCAAGCGCTGCGAGCTGGCTCCATATCCGCTAATAAGGCGAGCAAGGCATACGGTATTCCAAGCAGCACTCTATATAAGATAGCGCGCCGTGAAGGCATCCGCCTAGCTGCGCCGTTCAATGCCGCACCCACAGCCTGGCGTCGCGCCGACCTTGTGCGTGCACTGGCGGCCGTGCGCGGCGGCGCCAGCGTGCAGCTGGCCGCGCGGCATTATGGCATCCCCACCGGTACGTGA
Protein Sequence: MPGHGASVKREPLAEGSEPSAPFTNGYLMNQLPSLGNCPVKIENDCMQDIDDRSALLLDHLQSGLEELALPAPAGPAATPVCVQQEGRESPPATLESLQPAPHTSNGTTLLDRHFAMLSANEVAESCDFMPLLAVKDEPLSEGETQQTSGDEASEGSGERRGSPKSWTQRDMELALAALRTHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGSSKSWSEADLKGALQALRAGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLVRALAAVRGGASVQLAARHYGIPTGT

Sequence clustering based on sequence similarity using MMseqs2