Scos010899.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- stc
- Assembly
- GCA_905475405.1
- Location
- FR997831.1:17860370-17873133[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9 4.4e+04 -4.1 1.6 15 19 540 544 539 544 0.81 2 14 0.033 7.5e+02 1.6 1.2 2 10 572 580 572 580 0.93 3 14 1.6e-05 0.36 12.2 16.3 4 19 588 603 586 603 0.93 4 14 6.2e-08 0.0014 19.9 13.7 1 19 639 657 639 657 0.98 5 14 0.0039 88 4.6 19.6 1 18 694 711 694 712 0.99 6 14 4.1e-05 0.92 10.9 11.7 1 19 753 775 753 775 0.87 7 14 2 4.5e+04 -5.1 2.2 6 10 805 809 805 809 0.94 8 14 0.0015 35 5.8 5.2 1 11 815 825 815 827 0.95 9 14 0.013 3e+02 2.8 2.1 1 10 825 836 825 836 0.87 10 14 4.8e-06 0.11 13.8 13.5 3 19 844 860 842 860 0.91 11 14 2 4.5e+04 -5.0 1.3 6 10 889 893 888 893 0.61 12 14 0.0051 1.2e+02 4.2 14.6 9 18 906 915 899 916 0.91 13 14 5.1e-08 0.0011 20.2 11.3 1 16 952 967 952 975 0.90 14 14 3.7e-05 0.85 11.0 6.2 1 13 982 993 982 994 0.95
Sequence Information
- Coding Sequence
- ATGTCTCAGTGGAACAATACATACGCTTATAACAACCAGTACCAATCTTGGAACGGTGACCCTAATAGCCAACAATTTGTTAACCAGGCATATTATGCCAACAGAGCAGATCCAGCTAATCAGTATGTGAGCTTTAATGAGTTTCTATCTCAGATGCAAAACAATGGCGCTGCCAACGTTAATAATGCTGCCAACTACAACAATGCTCAGTACGAAAATTACCCTGCAAACCAGTATAATTATCAGAATGCACCTTCAACTTCACAAACCCCGCAagcaaataattatgaatatgcAGCCGGCTCGTCTAACAATGATACAGAAGTTTATCAAATGAATGCACAAAGCCAATATCATCCAACACAACCTGACCCTGGTACATACTCCAATGATGTGATTCTCAAATCTAACCTCACTCCAACGGCTACAGAGTTTGTGCCAAAAAGTTCAGGAGTAAATCCTTCTACTAGTACTCAGAACATTCCTGTATATGAAGGAAGTACTTCATGTGATGGTGATGAAACTAACAGTAGTAATAGAACAAAAGAAGCTAgaaatcattataataatatgaatgagTCCAGAAGTAAGTCAGGTAGCGCAGCTAATACTAACTGGAGAGAGAGACCACAGACCTCACAACAAAGTAATGAGACTGCAAAATCTGACTTACCCACTAACCCTCCAGATACTCAAAAAAGCCATAATAGTCGGAACCGCAATCACAGCAATGATTCTAATCGAAGACCGTttgataaaagtaaaaaataccAAGATTCCAATGAGCATGGTAATTCAAGTAAACAAGATACAAACAGTCAACCTTATGAAGCAAACCCTCGGGAATCAAGGGAACATAAAGCAGGTAGCCACAATACCGACTCTAGCCAATATAGTGAATCAAATACTCATAACCGTGATTCAAATAATTATAGCCAAGATACTCGAGATAGCCGTTCTTATAATTCAAGCCGGCATCAAGAGTCCAATAGCCgtaattatgattcaaaatatGAGTCAAGTAGTAGAAATTATGAAAATAGTAGATATAATGAATCTGGTTACCGGAACTCTGACTCAAATGGTCGTAGTAATGATTCTAATCGTTACGAACCAAGTAATAAGAGGggccaaaataaaaataattttaagtcaAAGAGCAAGGAACCAGATAATAGGACATTTTATAACAGTGCTATAGGAAAGGAAAGTCAAGATGTAAGAGGTTCTAGAGGTGAAGGTTCTGGTCGCTATAAGAGTTACGCAGGCAGTCAAAGAGTAAGAGGACGTAACAGTACTGAAGATGAACAATACGCTAACACTTATTTACAATCTAAAAACGAAAAGATAGAAAGAGAAAAAAGGGATAAATCTGAACATTATCAAAGTCCAACTAGATATAAGAAACACACCAACAATGATCAAGTTCACATAGAAATGACTCAACGAGAGCGTTTATCAGAGCAGTTGGATAAAGGTACACTTGAGTGCCTTGTATGCTGCGAGCGTGTAAAGCAGACGGAACCGGTGTGGTCATGTAGCAACTGTTACCATGTACTGCATCTCAGGTGTATTCGTAAATGGGCTATGAGTAGTATGGTTGAGGGCAAGTGGCGTTGCCCAGCATGCCAGAACACAAACGAGAGCATCCCTCACGAGTACCGCTGCATGTGCGGCGCGGTGCGCTCCCCGGAGTACCAGCGCGGCGCGGGGGGCGCGCACACGTGCGGGCGCGCGTGCCGCCGTGCTCGCGCCTGCCCGCACGTGTGCACGCTGCTGTGCCACCCGGGGCCCTGCCCGCCCTGCCAGGCTACTGTCGCCAAGCAATGTGGTTGCGGTGCTGAGACGAGGTCAGTTCTGTGCAGCAGTAAGTTACCGCAAGTGTGCGGGCGAGTGTGCAAGAAGCCGTTGGAGTGCGGCTCACATACATGCAGTATGGAATGTCATGAAGGACCCTGTGAGACGTGCAAGGAGACTGTTACCCAAGTATGCTACTGCAGCGCGGCTCGGTCCCGCGAGGTATCATGCACGACGGCCCACGCGTGGGCGTGCGGAGAAGCGTGCGCGCGAGTGTTAGCATGCGGCGCGCACGTGTGTCGCCAGCCCTGCCACCCGCCGCCCTGCCTGCCCTGCTGTCTGCTGCCCAGCGAGGTGCAAGCGTGTCCGTGCGGGAAGACTAAGCTGGCCCCAGGCTCGCGCAAGTCATGTACGGATCCGATACCTCTGTGCGGGAACATCTGCGCCAAGCCGCTCACGTGCGGACCTTCCGGAGACAAACACTTCTGTAAACTTGATTGTCATgaagGTCAATGCCCAGTATGTCCAGATAAGACAGTGCTCCAGTGTCGTTGTGGTCACTCCAGTCGCGAAGTGCCTTGTGCTGATCTACCGCAGATGTATAATAACGTATTGTGTCAGAAGAAATGTAATAAGAAGTTGTCGTGCGGTCGTCACCGGTGTCGCGGCGTGTGTTGCGGCGCGTCGTCTCACCGCTGCTCGGCGCCGTGTGGTCGCACGCTGTCGTGTCAGCTACATCGCTGCGAGGAGTTCTGTCACACTGGACACTGTGCGCCCTGCCAGCAGTTCAGTTTCGAAGAGTTAACATGTGAATGCGGTGTGGAAGTACTCATGCCCCCCATCCGCTGTGGCACTAGACCCCCGCCGTGCAGTGCCCCCTGCACCAGACCCCGTCCGTGTCAGCACCCGCCACACCACACGTGTCACTCTGGGGATTGTCCTCCTTGCGTCGTGCTCACTACGAAGAAGTGTCATGGGAATCATGAGGAACGTAAAACGATACCGTGTTCACAAGACGAGTTCTCGTGCGGTCTGCCGTGCGGTAAACCATTACCTTGTGGCAAACATACGTGCATCAAGACTTGTCATAAAGGCTCCTGTGAGACTGGCAAATGCACACAAGCATGCACGTCGCTGCGTCCATCCTGCGGTCACGAGTGCGCGGCGCCGTGTCACTCAGGCGCTGTGCCCGGCTCGACCCAGGCCGCGTGCCCCAGCTCCGCGCCGTGCCGCCGCCTCGTGCGCGCCACGTGTCCGTGTCGTCGCCGTCACGCCGACCGATACTGCTGCGACAACGCACGCGACTATGCCAAGTAA
- Protein Sequence
- MSQWNNTYAYNNQYQSWNGDPNSQQFVNQAYYANRADPANQYVSFNEFLSQMQNNGAANVNNAANYNNAQYENYPANQYNYQNAPSTSQTPQANNYEYAAGSSNNDTEVYQMNAQSQYHPTQPDPGTYSNDVILKSNLTPTATEFVPKSSGVNPSTSTQNIPVYEGSTSCDGDETNSSNRTKEARNHYNNMNESRSKSGSAANTNWRERPQTSQQSNETAKSDLPTNPPDTQKSHNSRNRNHSNDSNRRPFDKSKKYQDSNEHGNSSKQDTNSQPYEANPRESREHKAGSHNTDSSQYSESNTHNRDSNNYSQDTRDSRSYNSSRHQESNSRNYDSKYESSSRNYENSRYNESGYRNSDSNGRSNDSNRYEPSNKRGQNKNNFKSKSKEPDNRTFYNSAIGKESQDVRGSRGEGSGRYKSYAGSQRVRGRNSTEDEQYANTYLQSKNEKIEREKRDKSEHYQSPTRYKKHTNNDQVHIEMTQRERLSEQLDKGTLECLVCCERVKQTEPVWSCSNCYHVLHLRCIRKWAMSSMVEGKWRCPACQNTNESIPHEYRCMCGAVRSPEYQRGAGGAHTCGRACRRARACPHVCTLLCHPGPCPPCQATVAKQCGCGAETRSVLCSSKLPQVCGRVCKKPLECGSHTCSMECHEGPCETCKETVTQVCYCSAARSREVSCTTAHAWACGEACARVLACGAHVCRQPCHPPPCLPCCLLPSEVQACPCGKTKLAPGSRKSCTDPIPLCGNICAKPLTCGPSGDKHFCKLDCHEGQCPVCPDKTVLQCRCGHSSREVPCADLPQMYNNVLCQKKCNKKLSCGRHRCRGVCCGASSHRCSAPCGRTLSCQLHRCEEFCHTGHCAPCQQFSFEELTCECGVEVLMPPIRCGTRPPPCSAPCTRPRPCQHPPHHTCHSGDCPPCVVLTTKKCHGNHEERKTIPCSQDEFSCGLPCGKPLPCGKHTCIKTCHKGSCETGKCTQACTSLRPSCGHECAAPCHSGAVPGSTQAACPSSAPCRRLVRATCPCRRRHADRYCCDNARDYAK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -