Scos032169.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- nfxl1_1
- Assembly
- GCA_905475405.1
- Location
- FR997846.1:14762305-14764788[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 4.5e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 19 0.011 2.4e+02 3.2 0.3 4 10 169 175 168 176 0.97 3 19 2.7e-07 0.0062 17.8 16.1 3 19 186 202 185 202 0.95 4 19 1.4 3.2e+04 -3.6 1.1 6 10 227 231 226 232 0.51 5 19 5.4e-06 0.12 13.7 9.5 3 19 239 255 237 255 0.92 6 19 5.6e-10 1.3e-05 26.4 12.2 1 19 290 308 290 308 0.99 7 19 1.4e-05 0.32 12.4 15.5 3 19 345 361 344 361 0.93 8 19 2 4.5e+04 -5.3 2.2 5 10 384 389 384 389 0.88 9 19 6e-06 0.14 13.5 18.3 1 18 395 412 395 413 0.97 10 19 6.1e-09 0.00014 23.1 16.7 1 19 422 440 422 440 0.99 11 19 1.1 2.4e+04 -3.2 1.0 5 10 468 473 468 473 0.93 12 19 0.00044 10 7.6 7.2 10 19 489 498 487 498 0.91 13 19 0.0015 35 5.8 7.1 1 12 508 518 508 518 0.96 14 19 0.31 7e+03 -1.5 3.3 14 19 547 552 547 552 0.85 15 19 0.13 2.9e+03 -0.3 0.5 7 12 567 572 567 579 0.85 16 19 1.9e-05 0.44 11.9 5.1 1 11 588 598 588 599 0.97 17 19 0.0023 52 5.3 14.7 3 18 629 645 628 646 0.88 18 19 2 4.5e+04 -6.5 3.4 9 13 652 656 652 656 0.71 19 19 2.4e-05 0.54 11.6 9.1 1 16 687 701 687 706 0.87
Sequence Information
- Coding Sequence
- ATGGCGCGAAGATACAAAGACGCAGCTGCGAAATTGCAGCAAAATgttcaaaaacatttgaaagaAATGAAAGATCTTTCATCCTCGGAAGATGAAGAACCGTACGAAACTAGTGTTCTTGATGGAGTCTTTCAAAGTTATTGGAGAGGAGGAGGGGATACTTCTATGTTAAACAGAACTAAGAATCTTCTAGAAGAAGCTATAAGTGGTCGTGCTGTTACGTGCCTCATATGCATAGGGTCGATCAAAAGAATAGACGCTATATGGACTTGCGATCACTGCTATTGCTATTTTCATCTGTCTTGCATCCAGAAATGGGCCAACGATAGTATTAGCTTACGTAGTGAAGAAAGTACTGGACCAATTGCTGTATTCAAGAAACAGAAAATCGAGTGGTGTTGCCCTAAATGCCGAAATTCTTTTTCTAAAGAAGAGATACCTCGAAAGTATCGTTGTTTATGTGGTAAAACGGACGATCCTCCTTTCCACCCGTGGCTAATACCTCATACCTGTGGAGAAGTCTGTGGTAAGAGGTTGTCTGTAGGTGACAACTGTAAACACAAGTGTTTAGTGTTATGCCACCCAGGGCCGTGCCCTCCTTGCCCACAGACAGTTAATGGAGAATGCTATTGTCAAAAGGAACATAAGAGAGTAAGATGTAGTGCTGCTAAGTGGTCTTGCGGACAACCTTGTAAGCGAACACTTCTGTGCAAGACTCACAAATGTGAAAGTATTTGTCATGTAGATGATTGTGCCCCTTGCAGTTACACCAGCCTTCAGCCTTGTCAATGTGCAGCCGAGAAAGCTAAAAGACCTTGCAATGATCCCTTTTGGCAATGTGATAAGATATGTGGTAAATTGTTCTCATGTGGCTACCACAAGTGTGACAAACTGTGTCATTCAGGTGATTGTGGCTCATGTCCTAACTCTGGTAAGACAAGTTGTCCATGCGGTGCCAATCAGCGCTTTGTTCAATGTCCTGATGTCATGGAAACATGCTTAGGCACATGTAGCAAGAAACACAATAGTTGTGAACATGTTTGTCCTGAGAAATGTCACAGAGGGGCCTGCCCTCCTTGCCAAGTGTTAATTCAGAAAAGGTGTCAATGTAATACTCATACCCGGTCGCTTccttgcagtaaggagtttaaATGTGAAACAAAGTGTCGTGGAATCAGAGCTTGTGGGAAACATGGATGTGCACGAAAGTGCTGCAACGGTAACTGCCCTCCTTGTGAGAAAATATGTGACAAGCCACTCCAGTGTGGTAGACATAAATGTAGTAATATTTGTCATCACGGACCATGCTACCCTTGTCCCAGGGAGTCTAAAGTGACTTGCAGATGTAAAGACACATTTGTAACTGTACCATGTGGAAGAGAAAGACACACTAGACCTCCAAAATGCACTTCTTTATGTAAGATCAAATATAAATGTGGTCATGTTGAGGAAAATAGACATTCTTGCCACTTTGGTGATTGTCCACCATGCAAGGCAATTTGTGATAAAGCATACCCAAAATGTGGACACTATTGTGAAGGGGTGTGTCATGAATATGTGGCAGTTGTTTTCAAGCAGGTGGAAAAACCTGCTACACCATGGGAAGTACAACCACCAAAGACTAAGATAATGACACTAGAATGCCCACCTTGTACTACACCTGTGTCAATAGTATGTTTTGGGGAACATGAAACAGATGAACAGCCGTGTCATTCTGCCACCCGTAAACCCTGTGGCAGAGAGTGTGGGCGTCCACTAACCTGTGGAAATCATAATTGTACTTTATTGTGTCACCTTCATCATCCAGTTCCTGAATATCCAAATGTACCTTCTAGTTGCAGACAGTGTAATCAGGAGTGCTTAGTTCCTCGACCAGAGAAATGCACCCATAAGTGTTCCAAGGGTGCTTGCCACCCTGGAGTGTGTCCTCCATGTGACATATTAGAAAGGCTGCCATGCCACTGTGGTATTACTGAGATTTATTTACGATGTAGGGAAATATCTATTGCTACAGAAGAAACATTGTCCTGCAAGCAACAGTGTCCTAAGAATTTAGACTGCAGTCATCGTTGTCGTAATATTTGCCATTCAGGTGCATGTGAAAAACAGATTtgtactaaaaaaactaaaatacattGCCATTGTGGTAATCTAAAGAAAGAAGCACCATGCAATGCTATCCGTAGTGGAgcagttaaaatattatgtgaTGACTCATGTGAAGCTAAAAAGATAGCAGCTAAGTTGGAAAGTGAGAGAGAAAGAGAAAGGCAAAAAGCTTTGGAAGAAGAGAAGAATAGAAAGGAGCTGGCAGAATATGAGTGGAAGTTAAGTggtaagaaaagaaaatataaagagAAGAAAGTAGTCGCTTGCAAGGATAACAGGGGTCTGTTACAAAAGTATTGGATTCCTTTAGTTTCTACATTTATTGTTATGTTAGCtggtttttattatgtattctatgtacaattaaaaaattaa
- Protein Sequence
- MARRYKDAAAKLQQNVQKHLKEMKDLSSSEDEEPYETSVLDGVFQSYWRGGGDTSMLNRTKNLLEEAISGRAVTCLICIGSIKRIDAIWTCDHCYCYFHLSCIQKWANDSISLRSEESTGPIAVFKKQKIEWCCPKCRNSFSKEEIPRKYRCLCGKTDDPPFHPWLIPHTCGEVCGKRLSVGDNCKHKCLVLCHPGPCPPCPQTVNGECYCQKEHKRVRCSAAKWSCGQPCKRTLLCKTHKCESICHVDDCAPCSYTSLQPCQCAAEKAKRPCNDPFWQCDKICGKLFSCGYHKCDKLCHSGDCGSCPNSGKTSCPCGANQRFVQCPDVMETCLGTCSKKHNSCEHVCPEKCHRGACPPCQVLIQKRCQCNTHTRSLPCSKEFKCETKCRGIRACGKHGCARKCCNGNCPPCEKICDKPLQCGRHKCSNICHHGPCYPCPRESKVTCRCKDTFVTVPCGRERHTRPPKCTSLCKIKYKCGHVEENRHSCHFGDCPPCKAICDKAYPKCGHYCEGVCHEYVAVVFKQVEKPATPWEVQPPKTKIMTLECPPCTTPVSIVCFGEHETDEQPCHSATRKPCGRECGRPLTCGNHNCTLLCHLHHPVPEYPNVPSSCRQCNQECLVPRPEKCTHKCSKGACHPGVCPPCDILERLPCHCGITEIYLRCREISIATEETLSCKQQCPKNLDCSHRCRNICHSGACEKQICTKKTKIHCHCGNLKKEAPCNAIRSGAVKILCDDSCEAKKIAAKLESERERERQKALEEEKNRKELAEYEWKLSGKKRKYKEKKVVACKDNRGLLQKYWIPLVSTFIVMLAGFYYVFYVQLKN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932106;
- 90% Identity
- -
- 80% Identity
- -