Basic Information

Insect: Schrankia costaestrigalis
Gene Symbol: -
Assembly: GCA_905475405.1
Location: FR997828.1:7266325-7278080[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 3.5 4.3e+02 3.0 0.6 1 23 55 78 55 78 0.94

2 21 0.077 9.6 8.2 4.4 1 23 85 108 85 108 0.97

3 21 7.5 9.2e+02 1.9 4.4 1 23 201 223 201 223 0.97

4 21 0.0019 0.24 13.2 1.0 2 23 229 250 228 250 0.97

5 21 7.5 9.2e+02 1.9 3.1 1 23 256 278 256 279 0.94

6 21 0.23 28 6.7 3.4 2 22 513 533 512 533 0.95

7 21 0.096 12 7.9 2.6 1 23 630 652 630 652 0.95

8 21 0.59 73 5.4 0.3 2 23 791 812 790 812 0.96

9 21 0.16 20 7.2 2.1 2 23 893 914 892 914 0.96

10 21 0.011 1.4 10.8 0.7 1 23 922 944 922 944 0.98

11 21 0.13 16 7.4 3.4 1 23 972 994 972 994 0.95

12 21 0.00027 0.033 15.9 4.0 1 23 1002 1024 1002 1024 0.99

13 21 0.016 1.9 10.4 2.8 1 23 1110 1132 1110 1132 0.99

14 21 1.2 1.5e+02 4.4 1.4 1 23 1187 1209 1187 1209 0.95

15 21 3.5 4.4e+02 3.0 0.3 2 19 1216 1233 1215 1237 0.94

16 21 0.03 3.8 9.4 0.5 1 23 1299 1321 1299 1321 0.93

17 21 0.0041 0.5 12.2 1.8 1 23 1327 1349 1327 1349 0.96

18 21 0.0075 0.93 11.4 2.6 1 23 1438 1460 1438 1460 0.97

19 21 0.00019 0.023 16.4 1.4 1 23 1466 1488 1466 1488 0.99

20 21 0.29 36 6.4 2.5 1 23 1579 1601 1579 1601 0.96

21 21 0.014 1.7 10.5 5.6 1 23 1612 1634 1612 1634 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	3.5	4.3e+02	3.0	0.6	1	23	55	78	55	78	0.94
2	21	0.077	9.6	8.2	4.4	1	23	85	108	85	108	0.97
3	21	7.5	9.2e+02	1.9	4.4	1	23	201	223	201	223	0.97
4	21	0.0019	0.24	13.2	1.0	2	23	229	250	228	250	0.97
5	21	7.5	9.2e+02	1.9	3.1	1	23	256	278	256	279	0.94
6	21	0.23	28	6.7	3.4	2	22	513	533	512	533	0.95
7	21	0.096	12	7.9	2.6	1	23	630	652	630	652	0.95
8	21	0.59	73	5.4	0.3	2	23	791	812	790	812	0.96
9	21	0.16	20	7.2	2.1	2	23	893	914	892	914	0.96
10	21	0.011	1.4	10.8	0.7	1	23	922	944	922	944	0.98
11	21	0.13	16	7.4	3.4	1	23	972	994	972	994	0.95
12	21	0.00027	0.033	15.9	4.0	1	23	1002	1024	1002	1024	0.99
13	21	0.016	1.9	10.4	2.8	1	23	1110	1132	1110	1132	0.99
14	21	1.2	1.5e+02	4.4	1.4	1	23	1187	1209	1187	1209	0.95
15	21	3.5	4.4e+02	3.0	0.3	2	19	1216	1233	1215	1237	0.94
16	21	0.03	3.8	9.4	0.5	1	23	1299	1321	1299	1321	0.93
17	21	0.0041	0.5	12.2	1.8	1	23	1327	1349	1327	1349	0.96
18	21	0.0075	0.93	11.4	2.6	1	23	1438	1460	1438	1460	0.97
19	21	0.00019	0.023	16.4	1.4	1	23	1466	1488	1466	1488	0.99
20	21	0.29	36	6.4	2.5	1	23	1579	1601	1579	1601	0.96
21	21	0.014	1.7	10.5	5.6	1	23	1612	1634	1612	1634	0.98

Sequence Information

Coding Sequence: ATGCTACAGCAGATGTCCTCGCCGCCGTGTGCACAAGTCGGCGAGGTCGCGTCTGTCTTCGGCCGCTTTCTTGAAGGCCGCGTCGCCGGCGACGTATCTTCGGAGGCCTCATCGGACGCCAACGAAGATTCAGAGTTACCAGAGTGCAAGATAAAGAGGAACTATAATTGCGACAAGTGTACGTTCTATACGCAGAATCCGCGCGCTTATCTCGTACATACGCGCGACGCTCACTTTGTAAAACTTAAGATATTTGATTGTCCACACTGTGTTTATGCATCGAAACACCATCAGAAACTTGTACGACATATCAAAATGGTTCATGAAGACCCCGCATCGCAGCTTAGAAATTCAAAATCAACATCGTCGGTTAAATTAGATGTTGAAGTATCAAATGCTAACCACGAAGTTATGGAGCAACCTATGAGGATAGAAGATTTTATGGAGGAAGTGGAAGACTGCGACGACATGATGATGGAAGTCGAGGACGGCCCCGACTACTCGATGGAACATAATGAAGACATCGATGTCGTCGGTGACATGAGTATAGAACAAGCAGCGCCCTCCAACCTGTCAAAAACAAAAAGCAATGTTAAATTTTTCACTTGTGATAAGTGTACATACGTTACCCATATAAAAGCTAGGTTTACTAAACATGTGAAGTATCATTCTATGCCAATGATCAAGTGTACTATGTGTGATTTTCGGACACCATACAAATGGAACTTGGATCGTCATATGAAGAACCACGGTGGTAGTGGTAGTTTTCACTGTTCTATGTGCAACTTTACTGCAGACATAAAGCAGAGTCTCACTGTGCACGAAATGAATCATCACACACCGCCAGTGGGCCACTCACTGGCGAGTCGTCGTCGCAACCGGGTGGGCGCCAGCGACACTGTTATCGCGGAGTGCGACACACCAAGCGCGTCGCTCGTCAAGGAGGAAGAAGGGAGCGGTGACTCGCGGTCCTCACACTCGGTCTCGGAAATGGGTCTACAATACGCAGAAAGAGACATTGTGAGTTGTAAAAGTGATTCCAATGATGGGTCACCCTCCGAGCCTACTGGAAAGAAGGACAGCATGGGCTCACCAAATCATAGTTCAGATGAGTCTAAATACAAGCAAAGCAGAAAGATTCCGCGACCAATACCTCAACTTATACCTCTAAATAGTTCAACTCCTAACCAGAAAAGTGGTGAGCCACcacaaaagaaatttaaagaaTCTTCGCCCGTCGATTTAACAGACGAAAATTCCGACAACAAAATTGAACACCTATCTAACGACGTTACTATAACTCCCGTGAACAATATTTCTACAAAGGAAACAGCAGGTCGtaagaaaaataattcattttttgacaaattaaaagaGAGACTGCTAACAGAAACAGGAGAAAAGGGGTCGTTGATATGCAAAAATTGCGGTTTCGAAAGTAAATGTTTATCAGAACACTCTGTACATGAGAAAACCTGCATGCCGCAGGCCAATCGAGTCGCGGCAAACACTTCACTATCAAGCTTGAGTTCAACGCGTTGTCAAAACTGTAGACACAGATGCAAATCAAGTGCGGACTTATATATCCACATGCAGACATGCAGGAAACCAGTTGATGAtgacaattcagcagaagttaAAAATGATGATAGCAACGATACATCTGTTCAATCTCAggaaaaagaaattgaaaaacaTCCTATGGAAAACGTTGTATTTGTGTGGAATAATTTCACCCAAAATGCAAATAAATTTGATGTACCTctagatattaatataaatgatGATTCCACTCTTCCAGAAGCAAACAGAAACTACGATATAGAGATCATAGACGAGAGCGAATCTATGAATTTATCCCCAAGTCAAGCAGCCggaagaaaagtatttaaatgtCCACATTGTCCATTTTTCTCAACAACTGCATCCAGGTTTCATGTTCACATCGTCGGACATTTAAATAAGAAGCCctttgaatgttctttgtgccaATATAAATCAAACTGGAGATGGGATATAACAAAACACATTAAACTAAAGTCGGCTAGAGACCCTGAGCACAATGATGCTAAAGTGTTAATGACTGATGAGACAGGTAGAAGAAATTATAGCAAATACAATAAATTCTTGGCAATGCAGGTACTTAACGAATTTGGTGAAATTGAATTCCACTACCTGGAACCTAACATATCGGTAGACGGAACAATAGAAATGGACGAATCATTCCACGATGTCTCAGAAATTATGAACACCCAGTATGAAATGCAACCGCTTAATCTTCAGACGCAACATTTAGACGATAAATATGATTTCCTAGAAGACAGAGGATTAAATTTGAACGATCTGAAGAAACCTAAGAAAACTATGTGGAAATGTAAAAAATGCAATTATAGGGACCCTTCAAAAGAAGCTCTGTTAGAACACGTTCGTGAACACTCCAAGGATGGCATTCATGACGAGCAGCAAAAGCCACCTGCCAAGAAAGCTGAGAACGCCCCTGATCCGGCAGACTTGGCGTATCGTTGTGGTCACTGTCATCAACTGTCAAATTGGAAACATGTCATACAAcgTCACTGCCGTTTGAAACACGATGGAGTTATCAAAGTTATAACAACGGTGAAACCTAAACCGGACCCAGTAAACGTCATCACCCAAGCAAACGAAATCAACGATACAAGCTGTCACAAATGTCCGTTTAGGTCAAGTGACAAAAAAGTGCTACTTGCGCATCTTCAACAACATCAGCCATCACCGCTATCGGTATTTAAGTGCTTCTTTTGTCCTTACTTCGTTAAAGACGAAAATGAATTAACCCAACACTTACTTGTGCATGGAGTAACTGAACCAGAAGAGTATATTGCAAAAGCCATGGATGGGAAATCTCTTCTGAATGATACGCCAAACGCTAAACGTCACAGATGTACGGAATGCCCGTACGAAACAAACAGCAAGTCACAGTTTATGTACCACGAACAGTTTCACCGAACCCACGCAGATACACCTTATAAATGTCCCGAATGTAATTACAGCGTATCTAAAAGACATTTGCTGCATCAGCACTTGAGAGTTCACGGTATAATCACAAAACGACTTGACGTTGAATATGGAATAGACCAACCATCAACATCCAGTCAGAACAAGTTAGATGGCAAACAATATCAAACACATTTCTTGGATGAAATACCATTTGTTTGGGTATCGGCAAAGAACGAATTCCACAAAATGTATAAGTGCCGATATTGTTCTTACGTCAATTCACAAAAATGTAAGATTCCTAATCACGAAAAAATACATTGTATCTTTTTCGAAAACAATGAAACTACTATTTACAAGTGTCTTGAATGTAAATTTACATGTGATAATGCAAGCAAGCTAGCAGAACATTCCAAAACACATGGAGAGATATACGGTCGAATTTATTGTCCCGTAGAAGATGACGTTCCTGACGATgaacaaatacaaaaactaAGGAAAGTAATAGAAATGGAAAAGGCAAATAATACTGATATCATTCCTAAAGAGGAAGGAGTAAACGAAAACAGGGagttaaaattactttatttctgTCAGAAATGTCCAGCGAGATTCTTCGAAGTTAATGAATTGGAGAGTCATTTTAAATTTCATGAACcaacattttcaaataaatGTACAAGCTGTGATTATTGTGTATCGGAAGAAGCGGAGTTAGCCGCACATGATGTTGTTCATACAGACGAATATCATACGAAAACTAAAATGCTAAAGTTTATTCACAACTCACATCCATCTCATAGAGAACCTCGAATGGAATTTGTTCATTGTACAGCTAATTCGAAGACTGCATGGATTGTAGTAGGACCCAGTCCGATCGATATTCCTGAGAATGTTGTCAAAAAACACGTGCCAAAACAATATTTATGCAAATTATGTCCAGCAAAGTTTTTCAAAAGCTCGGCACTTAGTTACCATATGGGTTTGCATGGAGGAGAAGGTGATCACAAGTGTAAGAAATGCAATTATACCGTCAAAAACGTAGGAAACTTAGCAAAACATGAATTACTGcacgaaaatgaaaataaaaacatgaatTGTGATTACGAATCTGGTGATGACATAGACTATAAAATACCGTTATCAGGTACAGATTTGTTTCAACGAAAAACAGAAGCACAGAAAAGAGTGTTAACCGATAAGGATAAACTTGTTAAGCCAAATGATCATTTTCCTCCTGTCTTACAAGCAGATCCACAGTTTGGTTACTTAATGCATGGTAATCCTGAATTTATCTATCCAACATATCTTAAAAATGGGAGACAAAAAGAGAAACGCTACAAATGCCATAAATGTCCATCAGCATTTGAAAAACGAgaacaatataaaatacatttatcatTGCATGGATCAAAACAAAGATACAAGTGTGAACTATGCGATTATTCTGTAAAATATTACGCTAATTACGTACAACACATGAGGAAACATCAAATGAATGATGAAGCACAagcagaaagaaagaaagatagtGATCCTTTTGTAATAACAGAAAATCAGGATGAAGTGAAACATGAAGAAAGTACGGATAACATTAAACTTGCTATCAAATCTATGCCTAGAGGTCCGGCGAAAAGCGACTTTCAACAATTTTCTATTAGTGATCAACAAACACTCCGATTGCTACAACGCAGACGCTCAATTAACGACGGTAAAGAGGTTGGTTCGTCAGAAATATCACCAACTAAAGAACGCAAAATGCATATGTGTGTGTTATGTCCTTATACAAACCAGCGACAAGATTCCCTGACCAACCATTATAGAAGACATGGAGACGTTGATGTTCTCAATGCAGGCAATCATAGATGCACTCACTGTGACCTGGTGGTCGTTCAGTCACATTTCCTTAGAGAACATTTGAAGACCCACTTCAATCACCTCAAGAACCTTACGCCAGAATGTTTTGTTGCGAATAATGATGTTAGTTTTAGTGTTACAAAGTTGGATGATGAAGGTAGTGAGCCTGTTGATCTCAAATTAGAtgtgcaaaataaaaattacgcGTGTAATGAagacaaaatatttgttaaaattaagaCAGGAGAACTATTAGtttag
Protein Sequence: MLQQMSSPPCAQVGEVASVFGRFLEGRVAGDVSSEASSDANEDSELPECKIKRNYNCDKCTFYTQNPRAYLVHTRDAHFVKLKIFDCPHCVYASKHHQKLVRHIKMVHEDPASQLRNSKSTSSVKLDVEVSNANHEVMEQPMRIEDFMEEVEDCDDMMMEVEDGPDYSMEHNEDIDVVGDMSIEQAAPSNLSKTKSNVKFFTCDKCTYVTHIKARFTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGSGSFHCSMCNFTADIKQSLTVHEMNHHTPPVGHSLASRRRNRVGASDTVIAECDTPSASLVKEEEGSGDSRSSHSVSEMGLQYAERDIVSCKSDSNDGSPSEPTGKKDSMGSPNHSSDESKYKQSRKIPRPIPQLIPLNSSTPNQKSGEPPQKKFKESSPVDLTDENSDNKIEHLSNDVTITPVNNISTKETAGRKKNNSFFDKLKERLLTETGEKGSLICKNCGFESKCLSEHSVHEKTCMPQANRVAANTSLSSLSSTRCQNCRHRCKSSADLYIHMQTCRKPVDDDNSAEVKNDDSNDTSVQSQEKEIEKHPMENVVFVWNNFTQNANKFDVPLDININDDSTLPEANRNYDIEIIDESESMNLSPSQAAGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCQYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAMQVLNEFGEIEFHYLEPNISVDGTIEMDESFHDVSEIMNTQYEMQPLNLQTQHLDDKYDFLEDRGLNLNDLKKPKKTMWKCKKCNYRDPSKEALLEHVREHSKDGIHDEQQKPPAKKAENAPDPADLAYRCGHCHQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDPVNVITQANEINDTSCHKCPFRSSDKKVLLAHLQQHQPSPLSVFKCFFCPYFVKDENELTQHLLVHGVTEPEEYIAKAMDGKSLLNDTPNAKRHRCTECPYETNSKSQFMYHEQFHRTHADTPYKCPECNYSVSKRHLLHQHLRVHGIITKRLDVEYGIDQPSTSSQNKLDGKQYQTHFLDEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIFFENNETTIYKCLECKFTCDNASKLAEHSKTHGEIYGRIYCPVEDDVPDDEQIQKLRKVIEMEKANNTDIIPKEEGVNENRELKLLYFCQKCPARFFEVNELESHFKFHEPTFSNKCTSCDYCVSEEAELAAHDVVHTDEYHTKTKMLKFIHNSHPSHREPRMEFVHCTANSKTAWIVVGPSPIDIPENVVKKHVPKQYLCKLCPAKFFKSSALSYHMGLHGGEGDHKCKKCNYTVKNVGNLAKHELLHENENKNMNCDYESGDDIDYKIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKDSDPFVITENQDEVKHEESTDNIKLAIKSMPRGPAKSDFQQFSISDQQTLRLLQRRRSINDGKEVGSSEISPTKERKMHMCVLCPYTNQRQDSLTNHYRRHGDVDVLNAGNHRCTHCDLVVVQSHFLREHLKTHFNHLKNLTPECFVANNDVSFSVTKLDDEGSEPVDLKLDVQNKNYACNEDKIFVKIKTGELLV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -