Basic Information

Insect: Schrankia costaestrigalis
Gene Symbol: -
Assembly: GCA_905475405.1
Location: FR997855.1:3307863-3328690[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.76 94 5.1 0.3 3 11 246 254 245 258 0.87

2 21 0.57 70 5.4 1.4 1 23 266 290 266 290 0.93

3 21 0.012 1.5 10.7 2.7 2 21 368 387 367 388 0.94

4 21 0.38 47 6.0 3.9 1 23 833 855 833 855 0.98

5 21 0.76 94 5.0 0.6 3 23 862 882 861 882 0.90

6 21 7.9 9.8e+02 1.8 0.2 1 22 906 926 906 927 0.72

7 21 2.6 3.2e+02 3.4 0.9 3 23 975 995 973 995 0.91

8 21 0.3 38 6.3 1.0 2 21 1010 1028 1009 1030 0.75

9 21 7.5e-05 0.0093 17.6 5.6 1 23 1035 1057 1035 1057 0.98

10 21 0.034 4.3 9.3 3.3 1 23 1142 1164 1142 1164 0.97

11 21 3.8 4.6e+02 2.9 1.5 2 23 1170 1191 1170 1191 0.90

12 21 7.2 8.9e+02 2.0 0.3 1 7 1305 1311 1305 1323 0.90

13 21 0.0042 0.52 12.2 3.2 1 23 1337 1359 1337 1359 0.96

14 21 1.6 2e+02 4.0 0.1 2 23 1365 1386 1365 1386 0.91

15 21 1.2 1.5e+02 4.4 0.8 1 23 1410 1431 1410 1431 0.93

16 21 0.0012 0.15 13.8 1.9 3 23 1478 1498 1478 1498 0.95

17 21 0.00043 0.053 15.3 1.2 1 23 1513 1535 1513 1535 0.98

18 21 4.7e-07 5.9e-05 24.6 1.3 1 23 1541 1563 1541 1563 0.98

19 21 8e-05 0.0099 17.6 0.7 1 23 1568 1590 1568 1590 0.97

20 21 0.00018 0.023 16.4 3.2 2 23 1597 1619 1596 1619 0.96

21 21 0.00079 0.097 14.4 2.7 3 23 1658 1679 1657 1679 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.76	94	5.1	0.3	3	11	246	254	245	258	0.87
2	21	0.57	70	5.4	1.4	1	23	266	290	266	290	0.93
3	21	0.012	1.5	10.7	2.7	2	21	368	387	367	388	0.94
4	21	0.38	47	6.0	3.9	1	23	833	855	833	855	0.98
5	21	0.76	94	5.0	0.6	3	23	862	882	861	882	0.90
6	21	7.9	9.8e+02	1.8	0.2	1	22	906	926	906	927	0.72
7	21	2.6	3.2e+02	3.4	0.9	3	23	975	995	973	995	0.91
8	21	0.3	38	6.3	1.0	2	21	1010	1028	1009	1030	0.75
9	21	7.5e-05	0.0093	17.6	5.6	1	23	1035	1057	1035	1057	0.98
10	21	0.034	4.3	9.3	3.3	1	23	1142	1164	1142	1164	0.97
11	21	3.8	4.6e+02	2.9	1.5	2	23	1170	1191	1170	1191	0.90
12	21	7.2	8.9e+02	2.0	0.3	1	7	1305	1311	1305	1323	0.90
13	21	0.0042	0.52	12.2	3.2	1	23	1337	1359	1337	1359	0.96
14	21	1.6	2e+02	4.0	0.1	2	23	1365	1386	1365	1386	0.91
15	21	1.2	1.5e+02	4.4	0.8	1	23	1410	1431	1410	1431	0.93
16	21	0.0012	0.15	13.8	1.9	3	23	1478	1498	1478	1498	0.95
17	21	0.00043	0.053	15.3	1.2	1	23	1513	1535	1513	1535	0.98
18	21	4.7e-07	5.9e-05	24.6	1.3	1	23	1541	1563	1541	1563	0.98
19	21	8e-05	0.0099	17.6	0.7	1	23	1568	1590	1568	1590	0.97
20	21	0.00018	0.023	16.4	3.2	2	23	1597	1619	1596	1619	0.96
21	21	0.00079	0.097	14.4	2.7	3	23	1658	1679	1657	1679	0.95

Sequence Information

Coding Sequence: ATGTCGGATTCAGGAACAAAACGTTCGCGAAAAGCGAAGTTATTGCCTCGTGAATGCATGGAAATGGATGACGAGAATTATTTACAACTGCAGGCAAAAAGACGTGACAATAAGAAATCTACAATTAATAATGACACTACAAACTTTCAAACCGATGACTTTGAAGCTTTAATAGATGAAACCAGAAGGAAACGTAACACAAGACAATTCTCCGTTACCGTTGCCGTTGAAGAATTGAATGAAAATAATACAGATGTAACCGCAACTCAagaagatttaaaaaaagaaactatAGAGGTTGAAACTTCAAAACCGGAACAGTTTACATTGGAACGTGATGACATTATAAAGACAACGGATTCAATATACTATAATCCGGTAAATGATGCTGAAAAATTACTTGCTATTGAAGTTAAAAATACTATGGGACGTTTTTCTACGGATGACACCGATTTAATGAATGACAAATTACAATCTGTGCTTGGCTCGTGGCAAATATGGTATAAAATGCACTTAACAAACCAcaaaaatcatattttaaacagaccttTATCCTATAAATGTTACATCTGTAAACAAGCTTGGTGGCATCTATCTCCGTTTCGGGATCATATAAAAAATCACACCGTGCCATTCAACTTgcatttagaaaaatattcaTACTGCGAAATGAATATAATAGCATTTGATACAGATTACGATTTGTATATAGAAAATTTCCCTGTAAATGAGAATTGTCCGATTTGTGGGAAGCATTTTGATGTGCATAACTCCATTCCTAATTTAGATGCACCATACTCCTGTAACGTGAAGGATTGCAAATCAATATTTCCAACGTGTATGGATTTACAGAATCATGAATATGAACATATTCTAAACACATTTGGAGTTGAAAAGTGTTGCATAGTTTGCAAGGATATTAAATTTACAAACGATGAATTATACGAAGAACATATGAAATTGAGACATGAAGTACGGTCAGATTGGGTGTCGACTATCTATTTATATATGACTAAATGTATGCAATGCGGTGtacaatatataaatagtaattattgTTACAGTAAATTGCATGTTTGCTTAAGATTAGGGTTAGTAAAGCAGTGCAAAAGATGTTTCAAGAAGTTTCCGAATAAAAATGAACTTAGAGATCATACGAAACGTAGTACTAAAGCTTTTAAGTGTTCAGTGTGCGGTGTAGTGGATAAGAAATGTATGGAAGTAGATCATTTATTGTTACATACAGACAAATTTATAAAAGTGATCAAGTGTGttctttgtaaaaaatttgtgatATTTTTCAACGATGATGCGGCCATGTTACATTTGAAGACCGAGCATAAGAATGCATGGCATATTATAACAGCGTTTAAAACTAATCATCCTAATAATTATATGGATGTGaACCTTATACCAAGAAAGTGTATACCACACTTACTAGTCACTGTTGGAAGTTCTTCTACAAATGAAGCAAccggttcccgctcaataccATCTCACATAGAGGCGGTTGTACAGGAAAACTGGATCATTGCAGTCAAAGagGAACCAGTAGACCCATCATTAAATGCCCAAACGCTAGAAATTAATGCCCCACAATTGGCAATAAATGCCCCACAATTAGAAATAAATGTACCAACACTAGAAATGCACGCCCCAACACTAGAAATAAATGCCCCACAATTGGCAATTAATGCCCCACAATTAGAAATAAATGTACCAACACTAGAAATTAATGCCCAAACATTAGAAATAAATGCCCCACATTTAGAAATTAAACAAGAAGTTGTTGATGACTTTTATAATAACACAGAAAACGAAGATGATGACAATCAAATGATAATTAAACAAGAAATAGACATTGATGAAAATTTTGTTCATAATGATAATCAAGAATACAAATTTGTTAATGATACTTCAACTTTATACGGAGAAACAGTTAATGCGAATGATATAACTGTCAAACAAGAAGAAGAATCGGAATACGAAgatgatataataatactagatgaaaattatatcaataattataaactaaCACACGCGGTAATCGAAAAGACTGAAATAGAAGACGCTCAAAATGAATTTCAGAATGATGAAACTGATAATTTTGAAACGCAAGACTTTGAGAATAGTGAAACTGATGATTTAGAAAATGATATTAATGAGAATGAAGATAGCGATGAATATGTACCTAAGAATGAAAGAAAGAAGAGAAAGAAAAGTGTTATATATAAATGTAAGAAATGTAACTTTGAAGGAGCACATAGAGAATATAAGATTCATAAGTTGATGAAATGTGATGATGCTTTAGAGAcagTAACCATTAAAATCGAGGCCAACGAAGATAGCGATGAAAATTTTTTAACCGAAGAGAACTTAAAACAGGAACCAAATTCCTATCAATGTAGAAAATGTGGTTTCCAAGGACTTTATTCAGAATTAGTTGAACATAAAAACACTAATTGTGATACGATCTATCATGAAGAAGGAATATATAGCTGTACCAAATGTTTTAACACTTATAACACTTTAAACAACTATTTAAATCACTTCAGTACTCATGGATTTCAAAGAAATATATGTCCGGTCTGCTATAAACACTACAGTACGGATGAACGTTTAATATCACACTTTTACGGACACATACAAGGGAAAATTATAGTTAAATGTGCAACTAAAATACCAAATTTTAAGAAGAGAAGCAATATTGTATATACATGTAGTGATTGCCAAGAGATAGTTGAAAAAAATGATGTTTTTCAACATTGGGAGAGTCATTTCGTTATAACGGATAATGAGGAATTAAAAAAGAGACCTTtgaatgttaaaaaaattgttgaaaTTAAAAGCATTAGTGATCAGGAGTCGCTTAAATCTGTTATAGATCAACTACTAGATTCTACATCAACAGATTTGACATGTATTATCTGTCGAAAGCGAAGTAACAAAAAGCAAGATTTCAAAATTCATCTCATAGAGCATCTATATCGTCATGCATGCAAAGTAAATAAGAATGCCACTTTAACATGCCAAATAtgcaataaaaagtttaaagatatattatataagaaaCACATAGGGAACCATGTTGGCATTACATATGAATGTGAACATTGCAGAAAAAAATTCAGCAATTCAACTAACCTTAGCAAACATAAAAAGCTTCACGAAATCAATGAATTAATAACAGAGAAAGAAATTAAAGAAGAAATGAATCAATCAAGTGACGAATCAATACACGAACGAGAAGATTTAATACACGAACGGAGCTCAGAAGATGAATATATACCGCAAGGAAGGAAAACGAAAATAGAGCAAAAGTTATACAAATGTAAGAAGTGTGCCTTCGAAGCTCACCGTAAGGAGTTTAAAATGCATAAAATGCTGCACTGTAGAGAAGTTTATTATCATAAAGGAGACTATTCGTGCTCTAAATGTGGAATTATATATGAATCGTTTAGCCATTATGCTAAACACTTTACAAAACACGAATTTGAGCTAAACACATGCCCGGTTTGCCAAAAGAAATGCAACGTAGATCTCAAACTACTACAGCATTTGTATGAacatgtaaaaattaattatgaagttaaaaagattaataaaattaagaagaAGTATGATAAAACGCCTAAATTTGAGTTTAAGTGTATTAGCTGTGAGCAAAAGGTTGAGAAATTTGATTTATTTCCTCATTTTGAGATACATTTGAGTCAGAATTTGGTGGAGATCAAGAACGATGGTGTTAGGTATAATGTTCTTAAAGAGTACAGCAATGCAGCTTTCGCTTCGGCAATGTATGTCTCTATATTAGagTCGGCAAAAATTGATCAAAGTGATGATGAAGAACAAGATTACGAAAGAAGATTTATGTGCAAAGGCAGTAGCAAAACTAGGACCCCAATGATATACCGTTGTCACAAATGTGGCTTCGAGGGCCTACACAGCGCTTTCTCGGTCCACCGATTATCAAAATGCAGACTAACCTACTACAACGAAGGAATATTCAACTGCACAAAGTGTTTCAAAGAGTTCAGAACGTTTCAAAACTATGTCAGACATATTTCTGAACACGGATTCCAGAAAAACACCTGCCCAGTTTGTTTTAAGCAGTACAATAGCATAGTACAGCTAATACCGCATATATACCAACATATACAGTCTAAATTTGTAGCTGTGAATGTTTTTAAGATCAAAAATATGAAAGAGAAGAGGCAATTTGtgtataattgtaattattgcCAAGAGAGAGTGGAGAAAAGTGATTTCTTTGAACATTGGGAAAGTCATTTGAGTTTGGTGCCTTATGTGAGGTCTGAGAATGTTATAGAAGGCGTCGAAATTACTAGAATTAAAAGTAATCTTAGCGAGAATTTACTTAAATCTGTTATAGCACAACTACAATCAACAACAATACCAGAGACCGGCTGCATGATATGCGAGAGGCGTTTCGCAAGGAAGCATGACCTGAAACGGCACCTAGTGGAACACCTCTACCGAGATGCCTGTGCCCATGAAACGGACCACAACGGCTTCCAATGCCAAATATGCTTGAAGATGTATGCCAAGCCCTTTGCATACAAGAAGCATATGCGTGACCATGCTAATATGCCAGTGTATGAGTGCGAACAGTGTGATAAAAGTTTTAGTGATTCGAGCAATTTTGCTAAACATAAAAAAGTGCATAATATTAACGCGTTTACTTGTGATGTTTGCGGGAAGAAGTTTCAGCAGAAGGTTTCCATTGAGAAGCATATGGCGTACCACCAACAACACGAACCGATAACCTGCAAAATATGCGACAAAACTTTCCACTTTCCTTCCTTATACAAGAAACATTACAAAATGCTACACGAGAAGGAGAAACATACGTTTGGCTGTCGAGTATGCTTAGATAGGTTCGATTCCCTCAAGGAGAAATGGGAACATATGTGGCATAAACACAATATGAGATTGAATGTAGCcgattgtaatttttgtaataaaaaatttagaAGGCTACTAGATTTGAAGCAGCATATGAAATTTGATCATCGAGATAAGGTCCAGATCTGGGAAGATAGCGTGAGGAAAGAGAGAAGACAatcaaaacataaaaccaagCCTAAAATACTGCAGCCAGTATTATATGTGCAACAAGACTCGCCAGAGGAAACACTTGTTATAGTAGAGTGA
Protein Sequence: MSDSGTKRSRKAKLLPRECMEMDDENYLQLQAKRRDNKKSTINNDTTNFQTDDFEALIDETRRKRNTRQFSVTVAVEELNENNTDVTATQEDLKKETIEVETSKPEQFTLERDDIIKTTDSIYYNPVNDAEKLLAIEVKNTMGRFSTDDTDLMNDKLQSVLGSWQIWYKMHLTNHKNHILNRPLSYKCYICKQAWWHLSPFRDHIKNHTVPFNLHLEKYSYCEMNIIAFDTDYDLYIENFPVNENCPICGKHFDVHNSIPNLDAPYSCNVKDCKSIFPTCMDLQNHEYEHILNTFGVEKCCIVCKDIKFTNDELYEEHMKLRHEVRSDWVSTIYLYMTKCMQCGVQYINSNYCYSKLHVCLRLGLVKQCKRCFKKFPNKNELRDHTKRSTKAFKCSVCGVVDKKCMEVDHLLLHTDKFIKVIKCVLCKKFVIFFNDDAAMLHLKTEHKNAWHIITAFKTNHPNNYMDVNLIPRKCIPHLLVTVGSSSTNEATGSRSIPSHIEAVVQENWIIAVKEEPVDPSLNAQTLEINAPQLAINAPQLEINVPTLEMHAPTLEINAPQLAINAPQLEINVPTLEINAQTLEINAPHLEIKQEVVDDFYNNTENEDDDNQMIIKQEIDIDENFVHNDNQEYKFVNDTSTLYGETVNANDITVKQEEESEYEDDIIILDENYINNYKLTHAVIEKTEIEDAQNEFQNDETDNFETQDFENSETDDLENDINENEDSDEYVPKNERKKRKKSVIYKCKKCNFEGAHREYKIHKLMKCDDALETVTIKIEANEDSDENFLTEENLKQEPNSYQCRKCGFQGLYSELVEHKNTNCDTIYHEEGIYSCTKCFNTYNTLNNYLNHFSTHGFQRNICPVCYKHYSTDERLISHFYGHIQGKIIVKCATKIPNFKKRSNIVYTCSDCQEIVEKNDVFQHWESHFVITDNEELKKRPLNVKKIVEIKSISDQESLKSVIDQLLDSTSTDLTCIICRKRSNKKQDFKIHLIEHLYRHACKVNKNATLTCQICNKKFKDILYKKHIGNHVGITYECEHCRKKFSNSTNLSKHKKLHEINELITEKEIKEEMNQSSDESIHEREDLIHERSSEDEYIPQGRKTKIEQKLYKCKKCAFEAHRKEFKMHKMLHCREVYYHKGDYSCSKCGIIYESFSHYAKHFTKHEFELNTCPVCQKKCNVDLKLLQHLYEHVKINYEVKKINKIKKKYDKTPKFEFKCISCEQKVEKFDLFPHFEIHLSQNLVEIKNDGVRYNVLKEYSNAAFASAMYVSILESAKIDQSDDEEQDYERRFMCKGSSKTRTPMIYRCHKCGFEGLHSAFSVHRLSKCRLTYYNEGIFNCTKCFKEFRTFQNYVRHISEHGFQKNTCPVCFKQYNSIVQLIPHIYQHIQSKFVAVNVFKIKNMKEKRQFVYNCNYCQERVEKSDFFEHWESHLSLVPYVRSENVIEGVEITRIKSNLSENLLKSVIAQLQSTTIPETGCMICERRFARKHDLKRHLVEHLYRDACAHETDHNGFQCQICLKMYAKPFAYKKHMRDHANMPVYECEQCDKSFSDSSNFAKHKKVHNINAFTCDVCGKKFQQKVSIEKHMAYHQQHEPITCKICDKTFHFPSLYKKHYKMLHEKEKHTFGCRVCLDRFDSLKEKWEHMWHKHNMRLNVADCNFCNKKFRRLLDLKQHMKFDHRDKVQIWEDSVRKERRQSKHKTKPKILQPVLYVQQDSPEETLVIVE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -