Scos040713.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997855.1:4758656-4761241[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.069 8.5 8.3 0.1 2 23 31 53 30 53 0.92 2 12 2.2 2.8e+02 3.6 0.1 2 23 62 84 61 84 0.95 3 12 1.8 2.2e+02 3.9 5.4 3 23 91 111 89 111 0.94 4 12 0.0027 0.34 12.7 0.7 2 23 121 143 120 143 0.95 5 12 0.72 89 5.1 0.0 1 21 180 200 180 201 0.95 6 12 4.4e-05 0.0054 18.4 0.2 1 21 207 227 207 228 0.96 7 12 3 3.7e+02 3.2 0.2 2 23 267 289 266 289 0.88 8 12 0.35 43 6.1 2.7 2 23 298 320 297 320 0.96 9 12 0.081 10 8.1 3.3 1 23 329 352 329 352 0.90 10 12 0.00014 0.018 16.8 2.4 1 23 358 381 358 381 0.98 11 12 0.46 57 5.7 5.7 2 23 512 533 511 533 0.94 12 12 0.00051 0.063 15.0 1.1 2 23 540 562 539 562 0.92
Sequence Information
- Coding Sequence
- atgtcTACAAGCGACGAAGCTGAAGACCAGGAAAACCCTATAGATGTTTATGAAAACGACAACATAATATACTTACCAGATATCGACACAACATGTACAATATGCCAAGCGGAATTCCTAGACGCAAGCGATTTGAAAATTCACCTAGACCAAGTGCATAAAATACCAAATACTGTATTAAACAAATGTCAATTCTGTTTAGAAGAATATTCAGATGTAATGGAATACGCAGAACACTTAAGAGACCTACATTTATGTTCAATTAAATGTTGTTCTTACTGCTGGCGAATGTTTGACAATTACGACGACCACAAAAATCACGTAAAAAATCATATTGTTAACCAGAAATTGTCTTCTAGTAAATGTTCTCAGTGTCCACAAAGGTTTTCTAACGTCGGTACGTTAAAAGAACATGAATTTACTGAACATAAATACAGTATTGATggagtttttttaaatgatgtCTTTCCATACCTCTCTGCTGTTCTAAAAGTAAAGTCTATTACTTTTTTAGAGTCTATAGACACGGATGTTGTTTACATTTGTGTTGGCTGTGATCTGTCTACTGtagatataaatacttatttaagaCATGTCCGCGCAGACATTTGTAAAGTTTATGTCTGCGATAAATGTGGAAACGTTTTCAAACGAATGAGCTTATTGATAAGGCACTTAAAGCAATCTGCTTGTGATATATACGGAGTCAACAATAAGAAAATACGTCTCTGCACTGAATGTAATACATATGTAAGTTCTTTTATGTTTTGGAAACACAAGAAAGAGTGCAAACCTATTAAATGTCCGAcatgtaaaattaattttctaacTGTTAATGAATGGTCTGAACATCAGTCTATGGAACATGGAAATGTGTCCGTAGAAGTCCAAACATGTCAGTTCTGTTACAAACGTTGCGTTGGTAGCGAAGCAATGAAGAAACATGTAAATAAATTACACCGTCCTGAATTtcatttgtataaatatttatgtgtatATTGTGACAATGTTTTCAAACACCCTCAAAAGCTTTTCAGCCATTTTTATAGTAAACATAAGGATATGCATCCGTACACATGCAAAATATGTTATAAAACGTTCCGTCTCCGTAAAAAGTTCACCATACATATAAAAGTAGCTCATAAAAGTGAAGGATACGTTGAGTTTGATGAAAATTATCATGTATTTTTCACTGACAAGAAATCTGAACAACCGTTCATACCAAAAAGTATTTTTCCCACCGAGTCAAGTGATATTGTAGAAATATTGGATGACGATGCAGAAAATACTGACCTAAAGTCTGATGTTATGAACGGTACAGATATTGATGATGCAAAAACTGACACGGTTGCCAAAAAACGTAAATCAAACCGTAAGAGGAAAGCCAACATTGACAATACAGCCACTATAGGAACTTCAGATGAGGATGAACCATTGCTTAATGTACGAAAACGTGTCTGTATgcagaaaaagaaaactggaaACGGTCCTAGTAAAAGAATTAGCATGACAGAAAGAAATAGATTGGCTTTAACTtgtaaaacatgtaataagTACTGCTATACGTATCAAAATTATAATCATCATGTTGCTCTTCATTCTAAGCAcgaagaaaagaaatgtattaaatgctctaaagtttttaaaagtaaaagtaaattGGAACTACATATAGCAACCGACCATTCTTCGTCAAAGTTAACGGATACATTGAAAGTTTTACTTGAGAAGCGAAAGACAGGTGGACATATAACAGATGATTTACCTCCATCAATTAAATTCAGACGGACTATCAGGAAAGTAAATGTGGAGCCTACAAGAACGCCAGCAGAAATAACTCCTGTAGAACAAAAAATATCCGTTCAAAAATTTTTAGAAAACTTTCTTCccgaagaaaataaagaaacacATATTTCAACTTGCGCTTCTATCAAACTAGTGACTGGTCAACCGAAggaacctaaaattaaaatgacaCCGTTCAAACCGACTCcattaaaatcaacttttaaACTAGCCATGCCGGTCAAATTTGTAGATAACTACCCGGAGAAAGTTAAGCTTAAAGTGAATATTGTGAAAGTGGTACCAACTATGGATACTGCAGAGTATAACTCTGATTACGGTGACGATACACCAGATTTGGATAGAAATGAAACTATCCCGGAGGTGGCCGAGGAAATACTATTGGAAGTTGAAGAAAACCAAAAGATACCACAAGGAGATGTAACACATAAAATTGTATTACCGAATATTCCTTCCGAGTTGAGTGACTTTAGAATAGCACATTTATATCCGCAGGCTCCGTTCTATAAGATAGTTAAAGTTAAAGACGTTTTAGAGTCAAACGGTGATATTAAAGAAGAACCGAGTCACAGTGAACCGGAAAATTCTATTAAGTTACCGGACGGTACTAAATTAGTAACTACTAATCCTCTAGCACACTTATTGGGTAATCAACAGGAGAAAATATTGCagtcagttaaaaataaatattataaacctAAGAATAGGAATATACAAAGTATGTTAACTAAAGCTCTATCTATGTTGGAAAAGCCTACTCCTATAAGGAAGAAAAAGtga
- Protein Sequence
- MSTSDEAEDQENPIDVYENDNIIYLPDIDTTCTICQAEFLDASDLKIHLDQVHKIPNTVLNKCQFCLEEYSDVMEYAEHLRDLHLCSIKCCSYCWRMFDNYDDHKNHVKNHIVNQKLSSSKCSQCPQRFSNVGTLKEHEFTEHKYSIDGVFLNDVFPYLSAVLKVKSITFLESIDTDVVYICVGCDLSTVDINTYLRHVRADICKVYVCDKCGNVFKRMSLLIRHLKQSACDIYGVNNKKIRLCTECNTYVSSFMFWKHKKECKPIKCPTCKINFLTVNEWSEHQSMEHGNVSVEVQTCQFCYKRCVGSEAMKKHVNKLHRPEFHLYKYLCVYCDNVFKHPQKLFSHFYSKHKDMHPYTCKICYKTFRLRKKFTIHIKVAHKSEGYVEFDENYHVFFTDKKSEQPFIPKSIFPTESSDIVEILDDDAENTDLKSDVMNGTDIDDAKTDTVAKKRKSNRKRKANIDNTATIGTSDEDEPLLNVRKRVCMQKKKTGNGPSKRISMTERNRLALTCKTCNKYCYTYQNYNHHVALHSKHEEKKCIKCSKVFKSKSKLELHIATDHSSSKLTDTLKVLLEKRKTGGHITDDLPPSIKFRRTIRKVNVEPTRTPAEITPVEQKISVQKFLENFLPEENKETHISTCASIKLVTGQPKEPKIKMTPFKPTPLKSTFKLAMPVKFVDNYPEKVKLKVNIVKVVPTMDTAEYNSDYGDDTPDLDRNETIPEVAEEILLEVEENQKIPQGDVTHKIVLPNIPSELSDFRIAHLYPQAPFYKIVKVKDVLESNGDIKEEPSHSEPENSIKLPDGTKLVTTNPLAHLLGNQQEKILQSVKNKYYKPKNRNIQSMLTKALSMLEKPTPIRKKK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -