Basic Information

Insect: Schrankia costaestrigalis
Gene Symbol: -
Assembly: GCA_905475405.1
Location: FR997838.1:5080836-5083800[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00016 0.02 16.6 5.8 1 23 245 268 245 268 0.95

2 10 0.0091 1.1 11.1 3.2 1 23 274 297 274 297 0.96

3 10 2.3e-05 0.0029 19.2 0.2 1 23 309 331 309 331 0.98

4 10 0.027 3.3 9.6 1.2 1 23 338 360 338 360 0.97

5 10 5.2e-05 0.0064 18.2 1.0 1 23 366 388 366 388 0.99

6 10 0.00042 0.052 15.3 1.1 1 23 394 417 394 417 0.98

7 10 0.002 0.25 13.2 1.8 2 23 423 442 422 442 0.97

8 10 1.3e-05 0.0016 20.1 2.7 1 23 448 470 448 470 0.97

9 10 2.3e-05 0.0028 19.3 1.7 1 23 476 498 476 498 0.99

10 10 0.00014 0.017 16.8 0.4 1 23 504 527 504 527 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00016	0.02	16.6	5.8	1	23	245	268	245	268	0.95
2	10	0.0091	1.1	11.1	3.2	1	23	274	297	274	297	0.96
3	10	2.3e-05	0.0029	19.2	0.2	1	23	309	331	309	331	0.98
4	10	0.027	3.3	9.6	1.2	1	23	338	360	338	360	0.97
5	10	5.2e-05	0.0064	18.2	1.0	1	23	366	388	366	388	0.99
6	10	0.00042	0.052	15.3	1.1	1	23	394	417	394	417	0.98
7	10	0.002	0.25	13.2	1.8	2	23	423	442	422	442	0.97
8	10	1.3e-05	0.0016	20.1	2.7	1	23	448	470	448	470	0.97
9	10	2.3e-05	0.0028	19.3	1.7	1	23	476	498	476	498	0.99
10	10	0.00014	0.017	16.8	0.4	1	23	504	527	504	527	0.96

Sequence Information

Coding Sequence: ATGGCTAACGCAAAACGTAGATTAAAAGCACCTAAAAATACACTCAAAACTCGGTCGAAAAGAAAGCAGGCAGACGATCGGACTAATAAAACGTATAaatctttgaaaaatatgaTTACTATTCAATCTAGTAATGACATTGATGACTCTGTAGTGGCCAAAAGAAAAAAGGTTGAtagtgatttattatttttaactccAGATAAaggaaatgtattaaaaaaaggtCAACAACTCAAAGATTCATTTCAAGTTAAAGACCCTGTTATAGATGACAGACCTAAAAggagttttaaaaaatctacaAGTCCTAAATCTCCTGCTAAGTGTGAAATATCTAGTCCTATGAAAACAAAAAGTGGCCGCCtcaaaaaaacaaacaacaagtaTTTGAAACTGATGGATAACATTTTAAAGTCTGAATTATGTGTGATCCCAGGTAGTAAGAGGAAGAGATCTTCTAATAGTAAAGAATCTTCTAGTAACAAGGTGAACAATAATAACAACAGTGAAATAACTAATCAGAATCCTGATTGTAgtaataacaaaaacaacagTTTATCTGCATCATCTACTTCAACAAATGTTCTGAATCATACTACAGAGAGTTTACAAGATAAGCCTATCTCAAAATCCATTTCTAAACCTTGTGGCAGAGCAAGAAAAACTAGTCAAAGTACTACAAAATCTAAAGAAGTCACATTAGCCAAAATTGTTGTTGCTGAAGCTACATTTGAGTGTGACCattgcaaaaaaatatatagcaaAAAACATTCTTTAACGCGGCacataatatataaacattTGGCTAGAAAACAATACTCTTGTCCAGCTTGCAAGAAAAAGTTTCATGTACGTAAAAATATGAAGAACCATTTGGATAAAGAACATAGTTTTAAGAAAGTAGATGACACAACAAAAATGTATTCATGTGATATCTGTGATAAAGCGTTCCTGACTAAAGAAAATCTGATTCTACATCTAAATAGTCATGCTAACGGTGAAAATTCATTTAAGTGTATATACTGTGATCAAAAATTTGCATACCAACTCTTGTTAGTCCAGCATGAAAAGAAACATTTGGTTACAGGAAAATATCAATGCACTATATGTGATGTAAAGTATACTAACAGAGATAAACTTTATGTGCATGTAAAGAGCCATTTAAAACTCACAGATTACATTTGCCAGTACTGCGGCAGAGAATTTTTAAGATTAAACTCAATGAAGCGTCATGTCCGTACGATGCATTCAGGACATACAATACAGTGTCCAATTTGTAACAAGAAATTAAAGGGGCATTTGACAGAACATATGCGTACTCATGATCAAAAGCGCCCTCATAAATGTCTAGATTGTGGGAAGCATTTTGCACAATCCACTCAATTGAAAGTGCATGCGCGTGGTCATACAGGGTACCGACCATACAAATGCAGGATATGTGAACGTCCTTTCACTCATTCTAATGCACTCATGTTGCATGTAAGACGTCATACTGGTGAGAAACCTTTCCCTTGCGCTGAGTGTCCAATGTCCTTCTCTCAACTTCCACACATGAAGGCACATATGTTCAAGATTCACGGTAAAGAAAATCCATATAAATGCCTGCTGTGTTGCCAgtattataaattgaaaaaagACCTTTTGGTTCACAAAAAGAATTGCAATGGTACAGGCATAGATACAGATATTTATGGAGATAGAAGAATTTATGGGGACTGTGATCTCCTTCCTAAAGAATCAACAATGAGCTTATCCCGAATGAGATTCCTACTAGCTCTTCTTCTGACAATGGTTGCTACTAAAGCCAAACTGAAATATTTAGGGTTCAACAAACGTCTTGTTGACGACCTCCTTGTTGAGTCCTTAGAGGCCATGGACCAAGCTCCTTGCAAAGACAGTACCTTATCAACGCTTGTCAGGCTCAGAACTAATATTGAGACGCTGTTAAACGGGACAGTACCTAAAGAACAAATGGAGAAGTTTAGAAAGGAGAACAAGTCGACCGAAGAGTTGTTGGAGCTTCTTACCAGCGATAAAGATGAGTAG
Protein Sequence: MANAKRRLKAPKNTLKTRSKRKQADDRTNKTYKSLKNMITIQSSNDIDDSVVAKRKKVDSDLLFLTPDKGNVLKKGQQLKDSFQVKDPVIDDRPKRSFKKSTSPKSPAKCEISSPMKTKSGRLKKTNNKYLKLMDNILKSELCVIPGSKRKRSSNSKESSSNKVNNNNNSEITNQNPDCSNNKNNSLSASSTSTNVLNHTTESLQDKPISKSISKPCGRARKTSQSTTKSKEVTLAKIVVAEATFECDHCKKIYSKKHSLTRHIIYKHLARKQYSCPACKKKFHVRKNMKNHLDKEHSFKKVDDTTKMYSCDICDKAFLTKENLILHLNSHANGENSFKCIYCDQKFAYQLLLVQHEKKHLVTGKYQCTICDVKYTNRDKLYVHVKSHLKLTDYICQYCGREFLRLNSMKRHVRTMHSGHTIQCPICNKKLKGHLTEHMRTHDQKRPHKCLDCGKHFAQSTQLKVHARGHTGYRPYKCRICERPFTHSNALMLHVRRHTGEKPFPCAECPMSFSQLPHMKAHMFKIHGKENPYKCLLCCQYYKLKKDLLVHKKNCNGTGIDTDIYGDRRIYGDCDLLPKESTMSLSRMRFLLALLLTMVATKAKLKYLGFNKRLVDDLLVESLEAMDQAPCKDSTLSTLVRLRTNIETLLNGTVPKEQMEKFRKENKSTEELLELLTSDKDE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -