Scos038708.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997852.1:11055604-11059206[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.011 1.4 10.8 0.7 1 23 269 292 269 292 0.93 2 18 1.4e-05 0.0018 19.9 3.1 1 23 297 319 297 319 0.99 3 18 2.7 3.3e+02 3.3 1.2 2 23 323 344 323 344 0.94 4 18 0.0017 0.21 13.4 0.7 1 23 349 372 349 372 0.95 5 18 0.0008 0.099 14.4 0.4 2 23 434 456 433 456 0.96 6 18 0.017 2.1 10.2 0.9 1 23 462 485 462 485 0.93 7 18 0.004 0.5 12.2 0.4 2 21 489 508 488 509 0.92 8 18 0.014 1.8 10.5 0.6 1 23 517 540 517 540 0.95 9 18 1.1 1.4e+02 4.5 0.7 1 23 545 568 545 568 0.94 10 18 0.002 0.24 13.2 0.1 2 23 581 602 580 602 0.96 11 18 0.042 5.2 9.0 1.7 1 23 608 630 608 630 0.97 12 18 0.00031 0.038 15.7 1.9 1 23 666 688 666 688 0.98 13 18 0.049 6 8.8 0.1 3 23 694 714 693 714 0.93 14 18 0.00025 0.03 16.0 1.3 2 23 728 750 727 750 0.96 15 18 0.0011 0.14 13.9 2.7 1 23 756 778 756 778 0.98 16 18 0.0021 0.26 13.1 6.0 2 23 785 806 784 806 0.96 17 18 7.1e-05 0.0087 17.7 1.2 1 23 812 835 812 835 0.96 18 18 3.4 4.2e+02 3.0 1.6 2 23 841 863 840 863 0.95
Sequence Information
- Coding Sequence
- ATGGAGTCTACAGCAAGAAGTAATAATTGTCCCAGCTATGAATGGTTAAAACAAAAGTTGAATGTGTTATGGTCTTCACCCAAATTCTGTGGACTTTGCCTCGAGAGTAATGGCAACTTTTGCCCTGTTGATATGGAGCTTgtgataaataaacaaaacttcTCTAAATGCTTGCaagatataattaattatgtatttaatgatgatGTTGAAACCTTAATGTCAAGTACTTACTTATGTGACAGCTGCACTGAAAAAATCATCCAATCATACCTTTTCATCCACAATGccaaacaactgtcaaaaatgatGAATAACTGTGTAAGTGATGTTTACTCCAAAGTTATTGATGTCAATGAACAACTAGGCAATACATCAGACTATGAAAATCGCAATGTCATGATTGTACTTGAAAGTGGCATGGATCTGTACAAAACATTAATTGACACAAAGATGACTGAAATTGTACCAACTGCAACACCTATAGCCATGAAAATGGAAATGCCACAGCCTATTATTGAACCCAAAGAAGAAAACAACATAATAGAAGATGAATATCAAGAATCAACATTTTTATATGATGAATCTGTTGAAACTGTAgcacataataatttaaaggaAATAGTTATTCCAAAATTAGAGCCAAAAAATGAAGTTACTAAACCCAAAGATTGTGTAAAGACTCCGAAAAATATGAGAATGAAAAGCAAAACTGTATCAACACCCAACATTACACTAAAAGAAGGACATATAGTTATAAAGCCATTAAGTTCATCAAGGAACCTAACTCCTCACTATAACACATATGACTGTGCCAATTGTTCTGAAATATTCACAACATATAGAACACTAAAGGAACATGAGAAAGCTAAACATAACAAATCTGTGTTCCGATGCAACTTGTGTGATAAATCATATAATACTAGacaatatttaaacatacaTTACAAGACTCATGCCAAAGCAAAATGTAAATTCTGCCAACACGTATTACCAGAAGGTGAACTTATGGAACATTTACGAACTAACCATGCTTATTTAGTGTTCCCTTGTAAATTCTGTGATTTAGTATATTATTCACAAGATTCTTTACTGACACATTTTAAtataagtcatttagtaaataataCCAAAGTCAAATCACaatgtattatgtgtataaagAATTTCAAAGAAGATGAAAATATAAAGAAACACAAATGTAAGTTTGCATGTTCAGAGTGCTTTGTGATGCCATGtcttcattataaatatttaatgtcaTACAGAGAGCAAACTTTAAATCATGCAAACAAAGTTAAGTGTGTAGACTGTGATTATGTGACAAGTAGGAAAGAACACTTGATTGGGCATGTAAACAGAGAACACTTAGACCATCATCCATTTACTTGTGCAGATTGTGCACAACAGTTTTATACAAAATTGAGCTTAAAGACACACATAGTACAGTTCCATCAAGATCTTAACTGTGAATTTTGTGATTTTGTATTCAAAGACAGTAATACTTTGGAAAGTCataaaaaagtttgtaaaacTATTACCAGGGCATTTATTTGCAACCATTGTTCAGCGTCGTTTGATATGGAGGAAGAACTTAGCACTCATGTGAACTTAAGACACAACGAAAGTGTTTATGCATGTAATCTATGCAAGAGTAAGTTCTTAACTAATATAGAATTAGAGGAACATCACGCTAGAGTCCACGGAGGTATACAATGTAAGAAACGGAGGAAACACATTGAGTGTTCTGTATGTGacataatgtttaaaaatatcaaagaattGCTTGAACATGAGAAGTCCCATGAACCTGATGAAATATACCCGTGTAGAGTATgttcaaaacaatttaataGTTTAATGAAGCTCTACATGCACAATCAGAGGCACTATACTAAGAGAATAAAGTGTAATCGTTGTAATAAAAAAGTGGCAGCATCGTTCTTTCCGCAGCATGCAGTTAGATGTCCATACAAAAGACAAGCAGCTCTATGTCATGTTTGTGAAGTGTGCGGCAAATCATTTTACCTTGAATCATTGCTTCGGTTTCATCAGAGAACTCATTTGGATCGGGAACCATGCCCCGAATGTGATAAGATCATGAAACCGACCAGCTTGAAACGACATATGGAGCAAGTACACGGACTGGCAAAAAAAGTTATGTCAAAATTACCTTCGATTGAGTGTGAGTTATGTGGACATGTTGTTAGAAAAAAACATGATTTGGAAGCTCACATGAATAGATACCATTTCAAAATCAAGCCTTACGTTTGTCATATATGCAGTAAAGACTTCTGCGGTAAGATACGTTTGAAAGAGCATATTGCTACTCATACTAATGACAATAGCTGTTTCTGTTCAGTTTGTGGGAAGAAATTTGCTAACCGCGTGTGCCTGAAAATGCACTTTAGAATGCATACAGGGGAGTCACCATACGCTTGCGATATATGCGGTCTGAAATTCAGGTCCTCTAGTATGATGAAGACGCACAGGTTGAAAAAGCATTTGGACAAAACGGTTTCTTGTCCACTGTGTTCTAGTATGTTCTATATGGTAAGGGATATGAGGCAtcattttaaaaagatccattgGAAGTTCAAAGACCGACCTTTTAATGTTAAAGAAGTTAAGGAATTATCTAAGGAGcactattatttgtttgaagATGGAAGATTACCGAAATTGGATTCTTGA
- Protein Sequence
- MESTARSNNCPSYEWLKQKLNVLWSSPKFCGLCLESNGNFCPVDMELVINKQNFSKCLQDIINYVFNDDVETLMSSTYLCDSCTEKIIQSYLFIHNAKQLSKMMNNCVSDVYSKVIDVNEQLGNTSDYENRNVMIVLESGMDLYKTLIDTKMTEIVPTATPIAMKMEMPQPIIEPKEENNIIEDEYQESTFLYDESVETVAHNNLKEIVIPKLEPKNEVTKPKDCVKTPKNMRMKSKTVSTPNITLKEGHIVIKPLSSSRNLTPHYNTYDCANCSEIFTTYRTLKEHEKAKHNKSVFRCNLCDKSYNTRQYLNIHYKTHAKAKCKFCQHVLPEGELMEHLRTNHAYLVFPCKFCDLVYYSQDSLLTHFNISHLVNNTKVKSQCIMCIKNFKEDENIKKHKCKFACSECFVMPCLHYKYLMSYREQTLNHANKVKCVDCDYVTSRKEHLIGHVNREHLDHHPFTCADCAQQFYTKLSLKTHIVQFHQDLNCEFCDFVFKDSNTLESHKKVCKTITRAFICNHCSASFDMEEELSTHVNLRHNESVYACNLCKSKFLTNIELEEHHARVHGGIQCKKRRKHIECSVCDIMFKNIKELLEHEKSHEPDEIYPCRVCSKQFNSLMKLYMHNQRHYTKRIKCNRCNKKVAASFFPQHAVRCPYKRQAALCHVCEVCGKSFYLESLLRFHQRTHLDREPCPECDKIMKPTSLKRHMEQVHGLAKKVMSKLPSIECELCGHVVRKKHDLEAHMNRYHFKIKPYVCHICSKDFCGKIRLKEHIATHTNDNSCFCSVCGKKFANRVCLKMHFRMHTGESPYACDICGLKFRSSSMMKTHRLKKHLDKTVSCPLCSSMFYMVRDMRHHFKKIHWKFKDRPFNVKEVKELSKEHYYLFEDGRLPKLDS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -