Scos038540.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schrankia costaestrigalis
Gene Symbol
Zfy1
Assembly
GCA_905475405.1
Location
FR997852.1:8127970-8131104[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.044 5.4 9.0 7.2 1 23 160 183 160 183 0.95
2 16 4.2e-05 0.0052 18.5 2.0 1 23 192 215 192 215 0.97
3 16 0.015 1.8 10.4 0.4 2 23 228 250 228 250 0.97
4 16 0.00061 0.076 14.8 0.8 1 23 259 282 259 282 0.97
5 16 0.00039 0.048 15.4 2.3 1 23 294 317 294 317 0.97
6 16 0.00015 0.018 16.7 0.7 2 23 345 367 344 367 0.97
7 16 0.0014 0.18 13.6 1.2 2 23 377 399 376 399 0.96
8 16 0.1 13 7.8 1.7 3 20 405 422 403 424 0.90
9 16 0.00077 0.095 14.5 0.5 2 21 429 448 428 451 0.94
10 16 0.017 2.2 10.2 1.0 3 23 461 482 459 482 0.95
11 16 0.00028 0.035 15.8 3.5 1 23 487 510 487 510 0.94
12 16 0.00052 0.064 15.0 2.7 2 23 522 544 512 544 0.97
13 16 0.043 5.3 9.0 1.0 1 23 569 592 569 592 0.90
14 16 0.0035 0.43 12.4 1.5 2 23 626 647 625 647 0.97
15 16 0.02 2.5 10.0 0.1 1 23 713 735 713 735 0.97
16 16 0.2 25 6.9 2.0 1 23 741 764 741 764 0.96

Sequence Information

Coding Sequence
ATGGCAGGTGTGGATGTAAAAGTTGAAGTTAAAGTGGAACGGAAAGATCCTACTTCCTATCTACCAGAGGAACCGATGTcatatgaaattaaaaagaagaagaaaaaaaagaaaaagaaacatttaGAAGATGACCCTTTTAAAGATATTGATGATAAAATGGCTTCAAGGACcactgtggtgacggagtacgcaCCCGATTCCTTTGATccagaaattaatataaaagcaGAGAATATTGAAGTAGAATTGGATTTTAATGATTTCACTGACAACAATGGTCTAATGTTAGAAGCTCCACACAGTGAAGATAGTCAAGAGCCGGAAGTGAAAATAGAAAATCAAAGTCACGAAGCAGTCCTACTTACTTTCGAGAGCGTAGTCAGCGAAAAGAAATTGTTAACTTCACTAACAGAAGAGAAATTATTATCTTCCTTAGCAGAACAGCTACCACAACCATGTAAACCTAAAGCAGAACACTTCTGCAAAATTTGTCACCTAGTCTTTCAATCAACAAAAACTCTGAAAATGCATCAAAAGAGAAAACATAAAGTATACAGGAAGTCATTTAAACATGTTTGTGATCATTGTGGCATGGCATATGAAACTAAAAACAGTTTAGTAGCTCATATGAAAAGGAAACATGGACCGAACTCCATGCCTGATGATAGAGAAGAAAGGACGTGTGATATTTGTGCTCTTGTATTTAAAGGAATGGCCAGGTTACGCATGCACATGAGAAGAAAACACGGTTCATTCCAAGACTCTTTCAAACATGTTTGTGATGAGTGCGGCCTGACTTATGATAAATATAGAAGTTTAATCGTTCACATACAACGTAAACATACCAATCAAACGAAACCTGAAATAAATCATTGGTACAATTGCATGTTTTGTCCCAAAATGTTCACTAAAAGGGAGACTTACGCTAGACACATACAGAGAAAGCATAAAGTTACAGATGATAGTATAAAACAAGAAAACCCTGAAGGTGATCTAGAAGGCTCTAAAAATGAACAAACTGGTGAGATAACTTGTAAAGAATGCCCGTTAGTATTTtcatcaataaattttttgaaaCTGCACATGAGACGAAAACATAATGCTTTGACAGAGGATTTTAGATTAAAGTGTAGGATTTGTAACTTATCTTATGATAAAATTGAAAGTCTTAAACGTCACGTAAGAAGAAAACACGATAAAGGATCACATTGTGAAGTGTGTAACAAACAGTTTGATAATagagaaatgtatttaaatcatTCACATACTAAAGCTATAAAAGAATGTACTATATGCGGGCTTATATTCGCTTCTCAAGGTGGTCTAGCTAAACATCTACGTTGTACACATAAAATCGATTCACCGAAGACAATTTTCTGTAGTATATGTAATGAGGGATTTCATGATAAGCGTCAATTGAAACCGCATTTAATGAAAGTGCATTTAAAAGTATCATATACATGTAGGTATTGTAAGAAAGTATTTAAAGCGAAAGAGAGTTATCGTCGTCATATATTATTCAAACATCCTACTTCTAATTATTTTACTGAACACATGCAGAAATGTGATTTTTGTACTGAAACATTCAAAGACGAGTTTGAACTTtgtaaacatataaatatagtACACGGTAAGAATAGAGAAACTTTATCAGACTTAAAATTGGACATAAAAAGAGAAGACGAGGATGTAAAGACAAATTTTCAGTGTATAAAATGTCCAGAAGTGTACATAACATGGGAGCAGTTAAAACTACACTTTGAGCAATGTCACTATAATGCTGCAGAAACACAGTGTCAAATATGCGGGGAATTAATACCTGGAAATGAATTACAGAAACATATAAAAACAGTGCACACAAACACTGATATGCAGTGTAAGTATTGTGAGTTTAAAACTAATGTGAAAGTGAGTTTGACGCAGCATATGCTAAGACACAAGAACGCTTCAACACTCTGTTGTGATTACATGAATTGTAGATATAAAACATTCTATGAAGGTGCTATGGAGAAACACAAACGGAAACATTTAGATCAAGGGGTCAAGCTGCAATGCACACAGTGTCCGTTCCAAACTatgaataaatatatacttaaatatcaTGAAGAAGCTCATGAGACCGGAGTAAAACGATACATGTGTGATCAATGCGATTATGCTACAATTTTACCTGCCAATTTGGTTCagcataaatataaacattctgCTGAGAAACGGTTCAAATGTGAGGTGTGCCCTTTTGCTACTAAGTACAATACGTCGTTAAGATTTCACGTAAAGAAGAAACACTGTGATCTCCCAACATTcagttaa
Protein Sequence
MAGVDVKVEVKVERKDPTSYLPEEPMSYEIKKKKKKKKKKHLEDDPFKDIDDKMASRTTVVTEYAPDSFDPEINIKAENIEVELDFNDFTDNNGLMLEAPHSEDSQEPEVKIENQSHEAVLLTFESVVSEKKLLTSLTEEKLLSSLAEQLPQPCKPKAEHFCKICHLVFQSTKTLKMHQKRKHKVYRKSFKHVCDHCGMAYETKNSLVAHMKRKHGPNSMPDDREERTCDICALVFKGMARLRMHMRRKHGSFQDSFKHVCDECGLTYDKYRSLIVHIQRKHTNQTKPEINHWYNCMFCPKMFTKRETYARHIQRKHKVTDDSIKQENPEGDLEGSKNEQTGEITCKECPLVFSSINFLKLHMRRKHNALTEDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDNREMYLNHSHTKAIKECTICGLIFASQGGLAKHLRCTHKIDSPKTIFCSICNEGFHDKRQLKPHLMKVHLKVSYTCRYCKKVFKAKESYRRHILFKHPTSNYFTEHMQKCDFCTETFKDEFELCKHINIVHGKNRETLSDLKLDIKREDEDVKTNFQCIKCPEVYITWEQLKLHFEQCHYNAAETQCQICGELIPGNELQKHIKTVHTNTDMQCKYCEFKTNVKVSLTQHMLRHKNASTLCCDYMNCRYKTFYEGAMEKHKRKHLDQGVKLQCTQCPFQTMNKYILKYHEEAHETGVKRYMCDQCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-