Scos024067.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997841.1:829554-836181[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.1 13 7.8 3.4 3 23 38 59 36 59 0.91 2 15 3.3 4.1e+02 3.0 1.8 1 19 68 86 68 91 0.90 3 15 0.00059 0.073 14.8 2.5 1 23 97 120 97 120 0.96 4 15 7.3e-05 0.009 17.7 2.9 1 23 122 144 122 144 0.98 5 15 0.00043 0.053 15.3 0.4 1 23 180 202 180 202 0.98 6 15 1.6 2e+02 4.0 2.6 3 23 230 251 229 251 0.89 7 15 0.54 67 5.5 5.0 1 19 258 276 258 280 0.90 8 15 2.4e-05 0.003 19.2 0.6 1 23 286 309 286 309 0.94 9 15 0.0025 0.31 12.8 4.1 1 23 318 341 318 341 0.96 10 15 0.00038 0.046 15.5 0.6 4 23 351 370 347 370 0.91 11 15 0.13 17 7.4 1.6 3 23 378 398 378 398 0.97 12 15 0.002 0.25 13.2 0.1 1 20 403 422 403 425 0.92 13 15 6.1e-06 0.00075 21.1 1.9 1 23 431 453 431 453 0.98 14 15 3.7e-06 0.00045 21.8 2.1 1 23 459 481 459 481 0.98 15 15 0.00094 0.12 14.2 0.8 1 23 487 510 487 510 0.96
Sequence Information
- Coding Sequence
- ATGGAGCCCCCCATACAAGTAGACGAGACCGGTACTGACTGGCTCGAGCTAGAGAAACTAGTCGCAGGTTGTCCCAAGCCGACCGCTATAGACGTAGTAGGCGGCATCTTCTGCAACTTATGTCATTCTACATTTAATAACAAGAAGGAATTTGACCGTCATTACACTGAGCAGCACAACAAAACAACAGCAGGCATTGTGTACACATGTGTGATCTGTCACAAAGAGATAGCTCCGTACCCCAACTTTCGTAACCACTGCTATCTTGCTCATGTCACCAAGGATAGATTTAAaTGTGTCCACTGCAacaaacaattttcaaaaaagtCCATTCTGAATAACCACATTGATGTCATGCACCTCTTTAGGTGCTCATTGTGTCAAAAAGAGTTTCCATCAAGAACTGAACTTTGTACACATCAGAACATCCACAAACGAGAAAAGGACAAACCCCCGTACCCATGTCAGGAATGTTCACAAACAATAGAGAGTGTTGATATGTGTGAACTGCACATTGACGAGCACTGCAAAATTTTATATCCGTGCCCCATTTGTGATGAGACCACAAGCAGTAAGATGGAGACTACTAAACATCTAACCAAGCATTTTGATGAAGTACTTACAAATGAAATAGATGATACCGAAATAAGTTCCGAATGCTCCATAGATCTACTCGGTGGGATACTATGTTTCCATTGTGATGAGTTATTCAAAAATCGTACAGATTTCGATCTCCATTTTACAAATGAACATCCCGAGGAGGACATAATTTATTCTTGTAACATCTGTGGGAAGCAGTACCCTAAATATCATTTGTTTGCTGACCACTGCTACTTTCATGTGTCCAGGAATAAATTTGAATGCAGTGAGTGCAGCAAGTCATTCTCGCGTCTGTCTCTGCTGGTGCTACACACGCAGGCGTTCCACGCAGCAGGAGCGGTGGCCAAGCCGTTCTGTTGTCACGAGTGTGGGCACTCGTTCGGTACCGCCCCGCGACTGCGCGAGCATCTCCGCGCTCGCCATCAGCTGCAGGTCCTCGCATGTGCTCAGCCGCATTGTAACATGACATTCGAGACGCCTCGCGATCTGATCCTCCACCAGCGCAAGCATCAAGACATTCACGACAACTGGTGTCGCCAATGTGGTCTGCAGTTCAGTACTCTATCCTCCTGTCAAGCTCACCTCGACGTACATCGCAAGACACAATACGCTTGCCCCATATGTAACAAGGAATACCGTGAAAAATACCTCGTCATCAAACACATACCCTCACACTTCGAATCAGTTCTCCATGTATGCAAAGTCTGCGGCAAAGTATTTAATCAACGATACAGATTAGTCGCACACACGAAAACGCATTCAGAAATAAGACATCATAAGTGCAGCTACTGCGGCAAAGGTTTCATAAAACCATTCCAATTAAAACAACATCTCAACATTCACATGGGCTCTAAACCATACAAATGTATAGTATGCACAAAATCCTTCACCAATTATCCTAATTGGGCGAAGCATTTGCAAAAATTgcataaaatagataaaaataaactgaaaGTTCTAGctgaacaaattaaaaatgcaaATAATGATATGCTAATGATGAATGGTTCTGCTGATAAAGTTAAATGTGATAAAGCAAACAATAATGATAAAAATGAATGGGCTGTCGATTTTGTAAATCCTGAGATGGGCTTAGACAATTATATTTTGGCAGAATCAGATGATAGCACCGTAGACAGCATAGACCCGGCTATCATAGAGAAAGATTGGTGTATGTTGACTCAGAATGATCTGGTTGATAATAATCTACAATACACTGATATGCTGTCCGTTAACTGTACTACATTTGAATCTGAAATAAAACCACTAAATGGTGTGGAATGTTCCGGCGTTGTTCAGAATTCAGTGCTCCGCGAATACGGGCCGGAATTCAACATGGACGATGGCATCTTGCTGGACGACCACTACCTACCACACATCGACCCACTGCTTACCATCAAGCCAGCCACGCCCACACACAAGCTGTTCGTCACGGAGCCCGGGACTCCGGTCCAGGCGGGATGGGAGCCCCTCATCACTAAGGTATACCACAATTATGAGCCGGAAAATGTTAACACGTTCATGAACACAGATATATACTAA
- Protein Sequence
- MEPPIQVDETGTDWLELEKLVAGCPKPTAIDVVGGIFCNLCHSTFNNKKEFDRHYTEQHNKTTAGIVYTCVICHKEIAPYPNFRNHCYLAHVTKDRFKCVHCNKQFSKKSILNNHIDVMHLFRCSLCQKEFPSRTELCTHQNIHKREKDKPPYPCQECSQTIESVDMCELHIDEHCKILYPCPICDETTSSKMETTKHLTKHFDEVLTNEIDDTEISSECSIDLLGGILCFHCDELFKNRTDFDLHFTNEHPEEDIIYSCNICGKQYPKYHLFADHCYFHVSRNKFECSECSKSFSRLSLLVLHTQAFHAAGAVAKPFCCHECGHSFGTAPRLREHLRARHQLQVLACAQPHCNMTFETPRDLILHQRKHQDIHDNWCRQCGLQFSTLSSCQAHLDVHRKTQYACPICNKEYREKYLVIKHIPSHFESVLHVCKVCGKVFNQRYRLVAHTKTHSEIRHHKCSYCGKGFIKPFQLKQHLNIHMGSKPYKCIVCTKSFTNYPNWAKHLQKLHKIDKNKLKVLAEQIKNANNDMLMMNGSADKVKCDKANNNDKNEWAVDFVNPEMGLDNYILAESDDSTVDSIDPAIIEKDWCMLTQNDLVDNNLQYTDMLSVNCTTFESEIKPLNGVECSGVVQNSVLREYGPEFNMDDGILLDDHYLPHIDPLLTIKPATPTHKLFVTEPGTPVQAGWEPLITKVYHNYEPENVNTFMNTDIY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -