Scos010987.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- RTase
- Assembly
- GCA_905475405.1
- Location
- FR997831.1:18918972-18930961[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00065 0.08 14.7 0.3 1 23 641 663 641 663 0.95 2 12 0.38 46 6.0 1.3 5 23 671 690 668 690 0.93 3 12 0.05 6.2 8.8 0.3 1 23 737 760 737 760 0.96 4 12 8.8e-05 0.011 17.4 0.1 1 23 766 788 766 788 0.98 5 12 0.043 5.4 9.0 1.7 1 23 794 816 794 816 0.93 6 12 9.8e-06 0.0012 20.4 0.6 1 23 822 844 822 844 0.98 7 12 0.0003 0.038 15.7 1.4 2 23 851 872 850 872 0.96 8 12 1.5e-06 0.00018 23.0 1.2 1 23 878 901 878 901 0.96 9 12 6.9e-06 0.00085 20.9 2.1 1 23 907 930 907 930 0.97 10 12 0.00031 0.039 15.7 0.8 1 23 937 960 937 960 0.97 11 12 0.00092 0.11 14.2 0.4 1 23 966 988 966 988 0.99 12 12 0.45 56 5.8 0.0 5 23 996 1015 995 1015 0.89
Sequence Information
- Coding Sequence
- atGTCTAACTTAATACAACTTACTGACGATATAGATAGGACAGACATAATAACTTCATATAAAACTGATTCAATTGACAAATGTATAAGATCTCCTTCCTTCTCAAATATAACAAATTTCTGTAATTCACTGGACACTGTGATGGCGAATTGCAAAGGACATACCTGTATTATAATGGGTGATGTTAATCTAGATATTAAAAACGGCTACACCGACCAGCGGGCGACAGATTATTTAGATATAACCAGTTACCACGGTTACTATCCTGGTCACAATTTTCCAACTAGAGGATCGAATTGCTTAGACCATGTACTGGTAAAAACAAAGTATGATACAACTGTAGTGGTCTTTGGTGATAGTTTAGCTGCTGCCAGCCTCTCAAAACTAGAGGTCACTGAGGATTGCTTAGCCAGCAACTATAGTAAATCTGTATGCTACCAACATAACATTCCTAACTCTTTTTTCTTTACACCAACGGACGAAtcagaaatatataaatatatcaaaagCTTAAAAGTTACTAACTCCTCCGGTATGGATGGAATTagtaataatatagttaaatCTAATATAGTAACGTTAACAAAACCTATAACTTTCCTCTGTAATCTCAGTCTCTCTTCGAGCTGTGTACCTGCAGAGATGAAAATGGCTAACGTGTGTCCGATACATAAGAGCGGTGATAGATCGAACCCGGCTAACTATAGGCCAATATCTCTGTTGACAACTCTGTCCAAAATCTTGGAGAAGGTTGTCAACCAGAGACTTCTGGCCTACCTTGAGAGGAACCAGCTATTGTCGGACAATCAGTTTGGATTTAGGCCAGCGAGATCAACGGAGGATGCTGTTGTTTGTGCCGTAGACTACATAACACAGATAGTAGATAGCGGTAAGGCATGTATCGGTGTCTTTCTTGATCTCGCGAAAGCTTTTGATACTGTGTCCCGCAAAATACTGCTGGAAAAGATGAGGCTTATTGGAATTCGAGGAAGTCCATTGGAGTGGTTTTCCTCGTATCTTAGTGACAGAAAACAGAGAGTTGTTGTGGGGGGTCACTACAGTGAAGTCTCTATGGTCCACTTTGGCGTCCCGCAAGGTAGCGTTCTCGGGCCAatgctttttttaatatacattgACGCACTGTGCTCGCTAATGATTCCGGGAGCAAAAATTGTAACCTATGCCGACGACACATTGGCTATCTTCCAAGGGGACTCCTGGTCAGAAGTTTTTCAAGGAGCAGAAGCCGGTTTACAAATTGCTGCCGATTGGTTGAACAACAACTTACTTACTCTGAAGATTGATAAGACTCAAGCAATGTGTTTCAGTGCTTCTAAACGATCTGGTCCGAGAACGCCATGCAAAATCAAACTACACCTTTGTACAAGCACCGCGTCATGTAACTGCCCAGTGATAAAAAGcacaaatagtttaaaatatctGGGTGTCTACTTGGACAGTCAACTGACGTGGTCTGTGCACACTGAGGCCTTGAGAACAAGGGTTAGAAAActtatatatgtttttaaacACCTCTCAAAAATAGCACCTAATAACATCATAAAAATGATATACTTTGGAGTATGTCAATCAATTTTGGGATATTGCATTGTGTCCTGGGGTTGTGCTGCAAAGAATCGTGAATGTATGGTGGTGTTGGAAAAAATGCCAATCTGTAGTTGTAACAAATGCTCGGATGCATTTCATAATACCAAAGATATGATTGTGCAAGATAACAGCCGTGATGATCAATTTCTCAGACATGTTTCCAGTGCATATGTGAAGGTAGAAAAGAGTAACTGGGATTGTGGTGAATATAAACAATACTTTAGAAATAAGAGCAAACCACGCATAAGAAATCGTAGGGAGGATATGAAAGTGAAACCTGAATTAAGTGAATATTACACTCCTGTAAAATCTTACAAATGTCCCGAATGCGACTTTACATTTGTTGCTGAAACTACGTTACAAAAGCATTCCATTCTCCATCGACCATTCCCTCACATCTGTCACTGTGGCATCGGATTCTATAAATCGAACGACTTAAAGGAACATAAGATAGTAGTGCATGATGCTGATTCAGACTCTAGTCTCATTGAAGTTAAACCTAAACCTATTATACGTCATAAAGTTGGAAGGAAGTCCGTTATGCCAGACGTAGTTTTACCACCCttagatattaaaattatacgTAATGATCATGGTGATTATCAATGTCCCGAATGTCGGAAATGGCTTAAATCAAAAATATCTGTGGAGAAACATTATCGGGCTGTACATAAAGGTGAACGTCCCTACGTCTGCAAACAATGTAAGAAAGGATTTTCTCAAATAGCTGGGCTAAACATGCACATATTAATACATgttggtaaaaataattttaagtgtCAGTATTGTGACAAAGCGTTTCTAACTCGTGATAGAAAGAATTTACATGAACGTATTCATACAGGATATAAGCCACATAAATGTATGTTTTGTGAGAAGGCATTCAGTGATCCTAGTGCGTTAGCTCGACACGAAAGAATTCACACAAAAGATAAAAGATGTCGTTGTCCGTATTGTCCCAGTGCGTTCACAGATAGCAGCGCTCTATATCAACATAAGCTACGTCATGAGAATAAAAGAGAGTTCAAATGTGAGAAATGTCCAAGGTCTTTCTACAGTAAATCAGATTTAAGGAAGCATGTTTCCGTTGTCCACGATTTAGCACTCTACTTTACATGTGATTACTGCGGGGAGCATTTTTCttttaagaataatttaatgTCACACATACAATCAGTTCATGTTAAGAGAAGACCTCAACACAAATGTCCAAACTGCGTCAAAGCATATTACACCAAACAGGGTCTTAAAGATCACATCGAAACTGTCCATGTTAATGCATTACAGTACACGTGTGAAATCTGTTTTAAACAGTATGGAGTTCTAGGTTCCTATGAAAGACATATGAAAGTTCATATTAATGGAAAAATATATGAATTTTGTGACAAAGAATTTTCAAACAAAGCTGGTGCTGTGAGGCACGTAGTAATGTTTCACACTAAGAAACAATCTGAGACTATACCAAATGAAGATCCCGAAGTCAGGAACAATAATGTTGAATGCGTCACTTGA
- Protein Sequence
- MSNLIQLTDDIDRTDIITSYKTDSIDKCIRSPSFSNITNFCNSLDTVMANCKGHTCIIMGDVNLDIKNGYTDQRATDYLDITSYHGYYPGHNFPTRGSNCLDHVLVKTKYDTTVVVFGDSLAAASLSKLEVTEDCLASNYSKSVCYQHNIPNSFFFTPTDESEIYKYIKSLKVTNSSGMDGISNNIVKSNIVTLTKPITFLCNLSLSSSCVPAEMKMANVCPIHKSGDRSNPANYRPISLLTTLSKILEKVVNQRLLAYLERNQLLSDNQFGFRPARSTEDAVVCAVDYITQIVDSGKACIGVFLDLAKAFDTVSRKILLEKMRLIGIRGSPLEWFSSYLSDRKQRVVVGGHYSEVSMVHFGVPQGSVLGPMLFLIYIDALCSLMIPGAKIVTYADDTLAIFQGDSWSEVFQGAEAGLQIAADWLNNNLLTLKIDKTQAMCFSASKRSGPRTPCKIKLHLCTSTASCNCPVIKSTNSLKYLGVYLDSQLTWSVHTEALRTRVRKLIYVFKHLSKIAPNNIIKMIYFGVCQSILGYCIVSWGCAAKNRECMVVLEKMPICSCNKCSDAFHNTKDMIVQDNSRDDQFLRHVSSAYVKVEKSNWDCGEYKQYFRNKSKPRIRNRREDMKVKPELSEYYTPVKSYKCPECDFTFVAETTLQKHSILHRPFPHICHCGIGFYKSNDLKEHKIVVHDADSDSSLIEVKPKPIIRHKVGRKSVMPDVVLPPLDIKIIRNDHGDYQCPECRKWLKSKISVEKHYRAVHKGERPYVCKQCKKGFSQIAGLNMHILIHVGKNNFKCQYCDKAFLTRDRKNLHERIHTGYKPHKCMFCEKAFSDPSALARHERIHTKDKRCRCPYCPSAFTDSSALYQHKLRHENKREFKCEKCPRSFYSKSDLRKHVSVVHDLALYFTCDYCGEHFSFKNNLMSHIQSVHVKRRPQHKCPNCVKAYYTKQGLKDHIETVHVNALQYTCEICFKQYGVLGSYERHMKVHINGKIYEFCDKEFSNKAGAVRHVVMFHTKKQSETIPNEDPEVRNNNVECVT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -