Scos040841.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997855.1:5920407-5942512[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.017 2.1 10.2 1.9 1 23 30 53 30 53 0.98 2 15 0.00011 0.014 17.1 0.1 1 23 60 82 60 82 0.98 3 15 1e-05 0.0013 20.4 0.7 1 23 95 117 95 117 0.98 4 15 0.45 56 5.8 0.5 6 22 129 145 125 149 0.87 5 15 0.0012 0.14 13.9 0.1 1 23 157 180 157 180 0.94 6 15 4.8e-06 0.0006 21.4 1.1 1 23 186 209 186 209 0.95 7 15 0.11 14 7.7 0.2 3 12 220 229 219 232 0.89 8 15 0.066 8.2 8.4 0.7 1 23 269 291 269 291 0.98 9 15 1 1.3e+02 4.6 0.5 2 23 296 318 295 318 0.90 10 15 2.8 3.4e+02 3.3 0.8 1 12 329 340 329 343 0.86 11 15 8.7e-06 0.0011 20.6 1.1 1 23 349 371 349 371 0.98 12 15 0.14 17 7.3 2.2 6 23 383 400 379 400 0.91 13 15 1.7e-05 0.0021 19.7 0.0 1 23 411 434 411 434 0.96 14 15 0.00096 0.12 14.2 4.4 1 23 440 463 440 463 0.95 15 15 1 1.3e+02 4.6 0.3 3 12 474 483 473 486 0.83
Sequence Information
- Coding Sequence
- ATGTTTAGAGTATTTAATGTGACTCCGGAAGAGTTGAAGGCGGAAAGAGAGGAAATggcaaagaaagaaagatatCTAAGCTTGCCATATAAATGTGAAACTTGTATTGTAAGTTTTGATCATAATGTTACTTGGGAAAATCATATGAAGAAGAGGCATACTaagACGGATAAGTGTTTTCAATGTGATGTTTGTTTGGCAGTTTTTACCACGGAATCAGGTTTAAGAGAACATTTAAAGCTACATTATAGAAGcACAGTACACAAGCAGTCATCAAGGGTTTACCGCTGTGAGCCCTGTAACAAGACATTCAGCGCTAAGACAGGGCTTAACGTACACATGCGCACGCACGAAGATAACTTAGCACAGTCGTACTGCGCCCCCTGTGGGACTTATTATAGAACTAAGCAGTTGTTATTGACACATTTAAGTACCAGTTCTAAGCATGTTAGTGACAGTGATAAAAGATTCATATGTGATCAATGCGGCGTAAGATATGTTAAGAAGTCAGACATAAGAAATCATATACTTTGGGATCATTTGAAAATAAAGCCGCACAAATGCGATAAATGtacaaaaGCATTCAGAAGGGCCAACGAGCTTATACGTCACATCGCATACGTGCACAATAAGGAACAACCACCAAAGGACAAGATCTGTCAATATTGTGGAAAAGGCTTCTCtcATTACCTCAACGAAGGACACATCTGTTTATTATGCCATCGTATGTTGACTAAAATTGAATTGTTCAAGAGACAGGTCGAAGAAAATATTCTATTGTTAGAAGATCGGACAGACAACAATTATCAATGCGGTATATGTAAGTCAGTTTATGCCACGCAAGCAGTTTGTAACGAGCATATAAGGAGACATTATAAAAGgttaCAGTGTTTAGAGTGCGGTGCTAAATATAACAGTGATCACACAGCGATGGAACATTACAACCAGATGCATGCACCTGTAGATTCTGAACTACGAAAGGAGTATACTTGCGAGGAATGCGACTTTAGAACATCCACAGTACACAAACAGTCATCCAGGGTTTACCGCTGTGAGCCCTGTAACAAGACATACAGCACAAAGTCAGGGCTCCGCACCCACATGGAGTCCCACCGCCAGGAGCGACCACTCGCGTACTGCGCCCCCTGCCGGACACATTATAAGAATAAACAAGCTCTGATGACACATCTACGTAATCATTCTAGACATGTTAAAGATAGCGATAAAagatttataTGCGACGAATGCGGCGCCAAATTTGTTCAGAAGTCAGCCTTGGTCGTTCATATAAATTACGAGCATATGAATAGAAATCCACACAAGTGCAAGCAATGTTCTAAATTCTTCAAAGGCGCCGCGTGTCTTCGCCGCCACATCGCCTACGTGCACAATAAGGAACGACGTCCAAAGAACAAGATCTGTCATTACTGTGGGATCGGCTtccatCGCTATAAGGAGTCCACTATACCGCAACCATACCATGACTGTGCTAGGACCGTATCAGGAACGTTAAGTAAACACAACGACGGTACGCCagtaccacagtacaaccagtag
- Protein Sequence
- MFRVFNVTPEELKAEREEMAKKERYLSLPYKCETCIVSFDHNVTWENHMKKRHTKTDKCFQCDVCLAVFTTESGLREHLKLHYRSTVHKQSSRVYRCEPCNKTFSAKTGLNVHMRTHEDNLAQSYCAPCGTYYRTKQLLLTHLSTSSKHVSDSDKRFICDQCGVRYVKKSDIRNHILWDHLKIKPHKCDKCTKAFRRANELIRHIAYVHNKEQPPKDKICQYCGKGFSHYLNEGHICLLCHRMLTKIELFKRQVEENILLLEDRTDNNYQCGICKSVYATQAVCNEHIRRHYKRLQCLECGAKYNSDHTAMEHYNQMHAPVDSELRKEYTCEECDFRTSTVHKQSSRVYRCEPCNKTYSTKSGLRTHMESHRQERPLAYCAPCRTHYKNKQALMTHLRNHSRHVKDSDKRFICDECGAKFVQKSALVVHINYEHMNRNPHKCKQCSKFFKGAACLRRHIAYVHNKERRPKNKICHYCGIGFHRYKESTIPQPYHDCARTVSGTLSKHNDGTPVPQYNQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -