Scos017449.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997836.1:4371225-4380250[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.5 5.5e+02 2.6 0.8 1 23 85 108 85 108 0.94 2 20 0.68 85 5.2 0.1 3 23 113 133 111 133 0.95 3 20 2.7 3.4e+02 3.3 0.1 2 23 137 159 136 159 0.91 4 20 0.14 17 7.4 0.4 3 23 389 410 387 410 0.95 5 20 0.067 8.3 8.4 0.1 1 20 418 437 418 439 0.93 6 20 0.024 3 9.8 0.8 1 23 448 470 448 470 0.95 7 20 0.032 3.9 9.4 1.9 1 23 518 541 518 541 0.93 8 20 0.86 1.1e+02 4.9 0.1 2 23 553 575 552 575 0.89 9 20 9.6 1.2e+03 1.6 1.5 8 23 591 607 582 607 0.85 10 20 0.038 4.7 9.2 0.3 2 23 618 640 617 640 0.86 11 20 2.1 2.6e+02 3.7 1.3 1 23 645 668 645 668 0.93 12 20 2.7e-05 0.0033 19.1 1.9 1 23 674 696 674 696 0.97 13 20 0.00022 0.027 16.2 1.2 1 23 703 725 703 725 0.98 14 20 9.8e-05 0.012 17.3 2.3 1 23 730 752 730 752 0.96 15 20 0.00019 0.024 16.4 1.4 1 23 758 780 758 780 0.98 16 20 7.4e-07 9.2e-05 24.0 1.9 1 23 786 808 786 808 0.97 17 20 6.1e-05 0.0076 17.9 3.1 2 23 815 836 815 836 0.98 18 20 0.00096 0.12 14.2 0.7 2 23 844 866 843 866 0.97 19 20 0.00067 0.083 14.7 0.1 1 23 871 893 871 893 0.98 20 20 0.00051 0.063 15.0 3.4 1 23 899 922 899 922 0.98
Sequence Information
- Coding Sequence
- ATGACATCCGACGAATCCGATGATGAACCACTTTCAGTTATTGCAGCTAATAAGAAATTAAACCCGGAGCAGTATGTTTTTGATACTACTGATAACAACACAAAAACTGTagtaaaaaagaagaaaaagaaattacCTCCTCCGAAAAGGCTTTCGATAACAATAAAAGTGCACAAGAGTGAACCACCTCCTGTTATTGAGCGACCTGCTGACGTTTGGCTGTATCTCAAGGACTTGAACCCTTCTGGTCCTTATAGTTGCTTATTATGCCCTGAGTGGTTCATTAATAGGTCAAAGATTATCCTTCACTATTGTCTTAAtcacaaaaaagatttttgtggtatatgtaggtACTTCGTGCCTGATCGTGACTCCTGGTGGAATCATTTACAGTTTCACACACCGTGGCCCTGTTCACAATGTGTTGACAACTTTCAAACTGAATCAATCTTGCGAGTTCATCTAAGAACAGTCCACCAGCTTGTACATTGTAGACTTTGTCATTTCCGAGTCTCTGATGGTGAGCTTTATAATGCACATTTGTTTCAAAAACATACTGTCACTAATGTTGCAAGCAAAGATGATGACAACTTATGGGATATGGAGTATGAGGGAGCAACTAGTTTTCTATGTTTATTGTGTTCAAAGGCTGATAACCCAGTCAAAACATTCTTCAATCACTATATGGGCTATCATCATTTTACTTTAAAGTGCTTCACATCACTTGTGAGTGGAAGGGATTTGCCTTTTATTGTGAATGGTGCCGACGTTAGAACAGAATTTATTGAAGAGCAGTTGAAAAATCATCCACGGTATGGTTATGTAGAACTTGATTTAAAAGTTGGTAACTCTTTGGAGCCTAATAGCAATGTACAAGAAgcaaataatatgttaaataccTTTATACCAGAGATAAAACAAGAGAATGTGAGCGGGGATGAAGATAAAAATCCTAAAGAAGCCAATCCTGAAGTTGAAGAAATGATCAAATCTTATGAAGGTGTTGAGGATTATGATATAACATTGACAGAGCTTGTGGTAGTAGAGAAATgttattatgattatgttaaTCATATATTATTAGATCTTAAGTCAAATGCAGTTCATGTTCATTCTAATATAGACTATGAAAAGTCTACAGCTGATCTGACTATGGATATTATTTGTGCCGTTTGCAACGTTGAATATAACAATGTACACACATTTGTTACTCATATGATGAAGATGCACTGTATGAAGTACAAATCAATATTTTCTTGTAGAATGTGTACAGCTACTTTTGACAGTCAGAATGAGCTTGACAATCACGTTGCTCGTGAGTTAGGTGACTTCCGTGATCTTTTTATTTGTCAGTTTTGTGATATGGAATTCGAGGATAGGGAGAGTACAAGAAAACATTTAACAGAACATTGGGAATTATTGGATTATGAAAATTGTTTTAGTCCTCATTTAGGATTTAAATGTATGTTCTGTCCAACTTTGTTCTGGCATGAGACTGATAGAGAAATACATCAAGTAAGAGTACATTTCTCTAAATATAaggataattattatacttgtGAGCATTGCAGCGCAGTATTTGGAGATAAGaTCTGGTTTATCCACCATTACTTGGACAAACATACAAGCCCAAACAAAGTACCTCTGTATCTCATGAAGTGTTCTATTTGTAGTCTTGTTTTGTCAAACGTAGAGGAGATGAGGGCTCACTTCTCGGCACTACATTCAGAGGCTAAAAAGATGTATTGTTCTCTTGAATCTTGCAAATACAAACCACTGAGCCACCGAAAAAGTTTCAAACTTCATGTGCGGACAATTCACAATCCTCGGTTCCGTGTGGAACGCAACATGGAATGTAATGTGTGTGGGCGTGAGTTCACCAGTTCCAGGGCTTGTGGTGCTCACATGGCACAAGCTCATGGGCCCGGAAAGTTTAAATGCAAGTTGTGTGAAGAGGTTTTACATACTATGGATGAAAGAAAACTTCACTACCTAATAAGTCACCCGGGCCAGCATCCATTTGAGTGTACAGATTGCGGCAAATCATTCCAGTATAAATCTTCACTTTATATGCATAAGCAAGAGCATCTACCTAACAAGCAGAACTATACTTGCACTTACTGTGGAAAAGTATTCTTGAAACGCGACTCATTCCGCGAGCACGTACAAATACACGAGGGACCGCGGCACGCTTGCTCGTACTGTCCCATGAGGTTCGTGCAGCGCTCCAACATGTTACGTCACGAGCGGCGTCATACTGGCGAGCGGCCGTACGCCTGCCCTCATTGTCCGAGGAGCTTTGCCGATAAGGGTGCTTGTAACTCGCATGTCAGAACACATACCAAGACAACGTCGTTTGCATGCATGTACTGCGGGAAGACTTTCGTGCAGAAATCCAAGCTGACATATCATATCAGAAAGCATACCGGCGAgaATCTAGAAACGTGCACGGTATGTTCCAAAATATTTACGAGTGCATGTTCGTTGCGTGAACATATGAAGACACACGACATCAAGAAAAATACTGTCAAGTGCCCCTTGTGTGACCGCAAGTACCAGGACGAGCGCTACATGCTGCGGCACCTGCGCACGTCGCACACGCGCGCGCGCTACGCGTGTCCGCTGTGCGGCAAGCTGCTCACCAGCGCGGGCGGCCTGCGACACCACGTCATCACGCACAGCAGACTCAAGACCTTCAAGTGCAAAATGTGTGGGAAAGCATACTCCGTCAAAAGAACCATGCTGAAGCATTTCCGTAAGCGACACGGCTTCAAGGGTTCAGAAGCCATGAAAGAATTCTACACGCGCCTTGAACCTCGGGACTGTAATCTTGGTCTCGATGAAGAAGTTATGATCAGCATATTCGGACCACCAAAGAAAGAATCCAACGATGTATTAATGGGGGACTTTGTGACTTACGCTAATGTCGAACAGCAAAGACCAACAGAGAATAGACCAGACGCTGGTCCAGAATTGGAATACGATGACGACGATGAAGAAGATCAGCACGGGAATTCTAAATCAGATTCAGAAAACAGTGATAAGGGTAATCATCATTCTGGTACTGAAAGAGAAATTAAGACCCATATTGTCAAAATTGAACCTAGAGATTACAGTGAtcaaggtgaaaatgaattggAACCTACTGATTTTGTGAGCGTCAAGATTGAACCGGTTGATGATGACAATGAAATGGATAGAAATTAA
- Protein Sequence
- MTSDESDDEPLSVIAANKKLNPEQYVFDTTDNNTKTVVKKKKKKLPPPKRLSITIKVHKSEPPPVIERPADVWLYLKDLNPSGPYSCLLCPEWFINRSKIILHYCLNHKKDFCGICRYFVPDRDSWWNHLQFHTPWPCSQCVDNFQTESILRVHLRTVHQLVHCRLCHFRVSDGELYNAHLFQKHTVTNVASKDDDNLWDMEYEGATSFLCLLCSKADNPVKTFFNHYMGYHHFTLKCFTSLVSGRDLPFIVNGADVRTEFIEEQLKNHPRYGYVELDLKVGNSLEPNSNVQEANNMLNTFIPEIKQENVSGDEDKNPKEANPEVEEMIKSYEGVEDYDITLTELVVVEKCYYDYVNHILLDLKSNAVHVHSNIDYEKSTADLTMDIICAVCNVEYNNVHTFVTHMMKMHCMKYKSIFSCRMCTATFDSQNELDNHVARELGDFRDLFICQFCDMEFEDRESTRKHLTEHWELLDYENCFSPHLGFKCMFCPTLFWHETDREIHQVRVHFSKYKDNYYTCEHCSAVFGDKIWFIHHYLDKHTSPNKVPLYLMKCSICSLVLSNVEEMRAHFSALHSEAKKMYCSLESCKYKPLSHRKSFKLHVRTIHNPRFRVERNMECNVCGREFTSSRACGAHMAQAHGPGKFKCKLCEEVLHTMDERKLHYLISHPGQHPFECTDCGKSFQYKSSLYMHKQEHLPNKQNYTCTYCGKVFLKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRSFADKGACNSHVRTHTKTTSFACMYCGKTFVQKSKLTYHIRKHTGENLETCTVCSKIFTSACSLREHMKTHDIKKNTVKCPLCDRKYQDERYMLRHLRTSHTRARYACPLCGKLLTSAGGLRHHVITHSRLKTFKCKMCGKAYSVKRTMLKHFRKRHGFKGSEAMKEFYTRLEPRDCNLGLDEEVMISIFGPPKKESNDVLMGDFVTYANVEQQRPTENRPDAGPELEYDDDDEEDQHGNSKSDSENSDKGNHHSGTEREIKTHIVKIEPRDYSDQGENELEPTDFVSVKIEPVDDDNEMDRN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -