Scos034680.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997848.1:8117408-8135497[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.033 4.1 9.3 1.1 1 23 136 159 136 159 0.93 2 23 0.21 26 6.8 3.3 1 23 232 254 232 254 0.98 3 23 0.001 0.13 14.1 2.2 1 23 258 280 258 280 0.94 4 23 4.2 5.2e+02 2.7 0.8 1 15 285 299 285 308 0.83 5 23 7.6 9.4e+02 1.9 0.3 1 21 395 415 395 418 0.88 6 23 0.017 2.1 10.3 2.7 2 23 492 513 491 513 0.97 7 23 0.00014 0.018 16.8 0.0 1 19 517 535 517 537 0.97 8 23 0.22 27 6.8 2.4 1 14 544 557 544 567 0.82 9 23 0.32 40 6.2 3.9 1 23 576 599 576 599 0.96 10 23 0.00065 0.08 14.7 5.6 1 23 605 628 605 628 0.98 11 23 0.014 1.8 10.5 0.6 1 23 634 656 634 656 0.96 12 23 0.00022 0.027 16.2 1.1 1 23 662 684 662 684 0.99 13 23 0.34 42 6.2 1.0 1 15 690 704 690 706 0.88 14 23 0.00037 0.045 15.5 2.1 1 23 833 856 833 856 0.94 15 23 0.68 84 5.2 0.6 2 23 883 905 882 905 0.94 16 23 0.072 8.9 8.3 2.7 2 23 928 949 927 949 0.96 17 23 0.0025 0.31 12.8 0.2 1 23 953 975 953 975 0.93 18 23 0.025 3 9.7 1.2 1 23 980 1003 980 1003 0.95 19 23 0.031 3.9 9.4 1.0 2 23 1011 1033 1011 1033 0.91 20 23 0.022 2.7 9.9 0.3 2 23 1041 1063 1040 1063 0.96 21 23 0.0013 0.16 13.8 3.4 1 23 1069 1091 1069 1091 0.97 22 23 2.1e-05 0.0026 19.4 1.7 1 23 1097 1119 1097 1119 0.98 23 23 0.00021 0.027 16.2 8.5 1 23 1124 1147 1124 1147 0.98
Sequence Information
- Coding Sequence
- ATGTTCGaagGTGATGAAGATCAAAGCATCATTGAAATCAAAATTGAACCAGAGATCAATGAAGCAGTTATGGATACTACAACGAGGTCTTTTATAATGAAATCAAGAGATGATTCCAGGATAActgatattttcttaaatactaACCTTAGGCCTGATGATCGAAATGTCAAAATTGAGGTCAATAATGAAGAAATAATCAGAACTGCAAAGGGAAAATTAAAATCGACACCTGTTAAGATGAAAAAAAATGTCGGCCAGACTgacatacaaaataaacacaaaccaTATGTAAAGCCATCATTTTTAGAATCAAAAgcagaatttataaaaaatgagAACAACATAATACAAATACTTACGAATACTAACGCAACACCAATATGGCGGCATGAAGGCAATAGATTTTATTGCTTATTATGTAAATCTAATTATCGTGATGCGTCTTCACTAAAAACACATACCCTGGAATCCCACGAAATAGATAAAATGTTATCGTATATCAAAAACAGAAACATAAAAGAAAAGAGAAGATGTCTGAAATTGGATATAACCGGGTTGAGTTGCAAAATTTGTATGGAAAACATAGATTCACTTGAAAAGGCATTTGAACATTTAAAAACTGAACATATGAAAACTGTTTATACAGACGTCAAGAATGTTGTGTTACCGCTTAAGTTAGATGACGGTGCTTTCCGCTGTAGTATTTGTTGCAAAAAGTTCGAACGGTTTAGGATATTAATTGACCACATGCGTATACATTACAAAAACTACGTATGCGAGGTCTGTAACGCCTCTTTTATTACTCGTGATAATTATACTAAACATTGTAATAGCCACTTAGTCGGTAATTACAGTTGCGATACTTGTGCAAGAACCTTCATCAGTATCtcgaaaaaaatatatcacGATAAATATGCTCATTTAAAGAAACATTCGGATAAAAATGAAACAGTAAAATGTTCACCAAAAAATAATGTAGATGATAAGAGTGCAATACAAGATAACGTAGTGGATCTTGATACTTCTTCAGAAGAAGATAAAAAACACAATACAGACTCAGACACAAATCAAACAAGATTAATAGAATTCAGAGaagagcaaaaaaaaaatgaggcTAACGTTGTACAAGTACTGATGAATACAAACGCAACTCCAATATTGCGAAAAGAAGATGTTGGATACTTTTGTCTATTCTGCGACTCATATTTTGAAGAAGCAACAGCTTTGAAAGAACATAATTTAGACATTCATAAAGGCCATAAAGAAATAGTGTTTATGAAGAACAGAGATAGAATGGGTAAAAGGAGATGTCTTAAGCTCGATATCACTGACTTGAAGTGTATCCTTTGTGACAGTAACGTAGATTCACTAGAAAAAATGTTTGAACACTTAAAAGATGAACACGAAAGAATTGTTTATACTGatgtcaaaaatattattattccttttaagtttgatactggtattttacgCTGTTGCATTTGTTCTACAGAATTCGAGAAGTTTCAATCTTTAATGGGACATATGCGTACTCATTACATAAATTACGTCTGCGATGTCTGCGGGACTGGTTTTATCACGCGCGATAATCTAACTGCACACTCAACCTGCCACGTTATCGGtagttttaaatgcaataagtGTTCAAAGAGCTTTGATAGTCTACAAAAGAAGAACTATCACGATAAATATGCTCATTTAAAACAACGTAATCCTATGAGGCACAAGTGTGGCTATTGTAATGAAAGGTTCGTAGAAGATCGGCATAAAACTGAGCATATGACTAGAGTACACGGTATTACGTGTACCTTTAAGTGTAGGGCCTGTGACAAAACATTTACCAGCAAACATTATTTGTCACTTCACACGAGAAGAACTCATTTGATGGAAAGGAATTATAAATGCTCTGAATGTGATATGACCTTTTTTGTGGAGGCCGAAGCGCGGAGACACAAAGTTAAGCATACGGGCTTGAAGAAGTTCAAATGCGATGTCTGCTCCAAATTGTATGGATCTAAACGTTCTTTAAGAGAACAtatgaaaatacataataatgatAGAAGGTTTAAATGTGACCTTTGTGGATTAGCTTTTGTGCAGAAGTGTAGTTGGAAAGGTGATGAAGAAAAATCTGAAAATATAGAAGAAGTCGGTAAAAATGATCAAAAAGTTGTCAAACCTAAAATTGAGGACGAAGACTATGTACCGCATCGGTCAAAATTCGGGAAAAAGAAAATCGACGACGACGAAGACTATGTACCAGACAAAGAAATTAGAAAATACCTTACAATGAATAGCACAGGTAGTCGACAAACAGTTGTCAGAAAGGAAACCAAAGATGTAATGTCATCAAAGAGTAACGAAGAAACTCTTATAGtacatacacaaaataaaatggcACCCAGAACCGATTTATTAAAACATCGAGTTAACATTAAGGAAGTCATTACTAATTCTAACGCGACACCGATCAGACGTTACGGGGGTATTGGATACACATGTTGTTACTGTGACAAACAGTACACAGTACCTGCAGATTTGAAAAAACATACTTTGGAAACACATACTGATGTAACTCAAGCTAATTTCATGATAGGAATGAACATGTCCGAATATGTCGTTAAACTAGACATCACAGATCTTCAATGTAAACTTTgtaatacacaaataaatacattagaatCCTTCCTAGATCATCTGAAAGCAAAACACGAAAAACCCATTCACACTGATATTAAAAATCACATATTCCCTTTTAAGTTCATTGACGATATATTAAGATGTGTCCTATGCTCAAACACTTTCAGCAAATTTAGAATGCTAGTAAAACATATGCACATACATTACAGAAATTTTGTATGCACCATTTGTGGTTCGGGGTTTGTTAACCGCAATGCGTTGACACAGCACTCTGATAATCATAAACAAGGTGAATTCATATGTGCGCACTGCCCTAAAGTATATAAGACTCTAGTAAAGAAAAGGCTTCATGAAAGATCAGGTCATACGCACGTTGACAAAATGAATAGGTGCTCTTATTGCCCGGAAACGTTTAAAGATTATCGAAAACGGGAGGCACATTTGACAGAAAAGCACGGCGTTAAGTCATCTAACATCAAATGTCAAGCGTGCGATAAAATTTTGAGTAGCAGTAAGCTCCTTAGCATACATGTTAAGCGCGATCATCTAATGGAAAGACCACACAAGTGTAGTGACTGTGATATGAAGTTCTTCTCTACTACTGGTCTTAAAAACCATATGGTGAAGCATACTGGCTCAAGGGCTTTTAGTTGTACGATCTGCCTGAAGTCTTATGGAAGAAAGAAGACCTTGAATTCTCATATGAGGATACATCAAGAACAGACATTTAAATGCGAACATTGTGGTCGATGTTTTGTACAGAAATGTAGCTGGAAAGGACATATGCGGACCAAACATGGGGAGATTGTTTAA
- Protein Sequence
- MFEGDEDQSIIEIKIEPEINEAVMDTTTRSFIMKSRDDSRITDIFLNTNLRPDDRNVKIEVNNEEIIRTAKGKLKSTPVKMKKNVGQTDIQNKHKPYVKPSFLESKAEFIKNENNIIQILTNTNATPIWRHEGNRFYCLLCKSNYRDASSLKTHTLESHEIDKMLSYIKNRNIKEKRRCLKLDITGLSCKICMENIDSLEKAFEHLKTEHMKTVYTDVKNVVLPLKLDDGAFRCSICCKKFERFRILIDHMRIHYKNYVCEVCNASFITRDNYTKHCNSHLVGNYSCDTCARTFISISKKIYHDKYAHLKKHSDKNETVKCSPKNNVDDKSAIQDNVVDLDTSSEEDKKHNTDSDTNQTRLIEFREEQKKNEANVVQVLMNTNATPILRKEDVGYFCLFCDSYFEEATALKEHNLDIHKGHKEIVFMKNRDRMGKRRCLKLDITDLKCILCDSNVDSLEKMFEHLKDEHERIVYTDVKNIIIPFKFDTGILRCCICSTEFEKFQSLMGHMRTHYINYVCDVCGTGFITRDNLTAHSTCHVIGSFKCNKCSKSFDSLQKKNYHDKYAHLKQRNPMRHKCGYCNERFVEDRHKTEHMTRVHGITCTFKCRACDKTFTSKHYLSLHTRRTHLMERNYKCSECDMTFFVEAEARRHKVKHTGLKKFKCDVCSKLYGSKRSLREHMKIHNNDRRFKCDLCGLAFVQKCSWKGDEEKSENIEEVGKNDQKVVKPKIEDEDYVPHRSKFGKKKIDDDEDYVPDKEIRKYLTMNSTGSRQTVVRKETKDVMSSKSNEETLIVHTQNKMAPRTDLLKHRVNIKEVITNSNATPIRRYGGIGYTCCYCDKQYTVPADLKKHTLETHTDVTQANFMIGMNMSEYVVKLDITDLQCKLCNTQINTLESFLDHLKAKHEKPIHTDIKNHIFPFKFIDDILRCVLCSNTFSKFRMLVKHMHIHYRNFVCTICGSGFVNRNALTQHSDNHKQGEFICAHCPKVYKTLVKKRLHERSGHTHVDKMNRCSYCPETFKDYRKREAHLTEKHGVKSSNIKCQACDKILSSSKLLSIHVKRDHLMERPHKCSDCDMKFFSTTGLKNHMVKHTGSRAFSCTICLKSYGRKKTLNSHMRIHQEQTFKCEHCGRCFVQKCSWKGHMRTKHGEIV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -