Scos034717.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997848.1:8403101-8410800[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.4 1.7e+02 4.2 0.2 2 23 75 97 74 97 0.92 2 19 0.022 2.7 9.9 2.5 2 23 120 141 119 141 0.95 3 19 9.2e-06 0.0011 20.5 1.3 2 20 146 164 143 166 0.88 4 19 0.045 5.6 8.9 2.2 3 23 205 226 203 226 0.90 5 19 7.3e-05 0.0091 17.7 0.1 1 23 233 256 233 256 0.96 6 19 0.00021 0.025 16.3 0.3 1 23 261 283 261 283 0.97 7 19 1.3e-05 0.0016 20.1 0.9 1 20 289 308 289 311 0.94 8 19 0.079 9.8 8.1 0.4 1 13 317 329 317 330 0.92 9 19 0.02 2.5 10.0 0.1 2 23 343 364 342 364 0.96 10 19 2 2.5e+02 3.7 4.6 2 23 405 426 404 427 0.91 11 19 2.2 2.7e+02 3.6 0.0 2 23 454 476 453 476 0.94 12 19 0.074 9.1 8.2 2.1 2 23 503 524 502 524 0.95 13 19 0.0024 0.29 12.9 1.5 1 21 528 548 528 551 0.96 14 19 0.0024 0.3 12.9 0.3 1 21 555 575 555 576 0.96 15 19 5.8 7.2e+02 2.3 0.3 5 23 587 606 579 606 0.84 16 19 0.0009 0.11 14.3 0.6 1 23 613 636 613 636 0.97 17 19 0.019 2.4 10.1 1.1 2 23 642 663 641 663 0.92 18 19 5e-06 0.00062 21.3 0.4 1 20 669 688 669 691 0.95 19 19 0.00084 0.1 14.4 1.7 1 23 697 719 697 720 0.95
Sequence Information
- Coding Sequence
- ATGTACATCGCAAAAAGGAACGCCCAGACTGTTATGCAAAATGCAACTGTTTATCCTTTTAGACTCCCAGAGAGCTCCATCGTATGCGTGTACTGCTGCGACAACTTTGACGACGGTCCGCTCTTCAGGACACACATGGATACAAACCATAAGAACGTAAATATTAAAGTTGCCTACTCGCACTTGAACGAGGGCTTCATCAAAGCAGACTGCACCAATATAAAATGCAGGATATGCTCGCAACCATGTGATAACGTTGACGAAGTCGCAGTACACTTAAATGATAAACacaataagaaaataataatgcaCTTTGGTGTTGGAATACAACCTTTTCGAATGGAAAAAGACAAATTGTCTTGCGCTATTTGCGACACTAAATGCTCGAACATACGAAGCCTTAGTAGACATATACATGGGCATTTCTTCCAATGCACATGCGAACTATGCGGCAAATCATTTGCTACTTCGACGTCTCTCCAAAAGCATATAGAGTTTTCTTGCCCTTTGGTCCCCAAACAGCGTAGATGTAGGAagtgtaaaatagttttatattcGTCAGAAGAACATAAGAAACATTTAGAATTATCTAGGAATTGTCGTCAACATCTATGCTCAGTTTGTGGCGATAGATTCAGCAATTGGAAGCTAAAGAGGCATCACATGGAAGAAGCACATGCTGTTCCAAAAAAGGTGTATCCCTGCCCAGAATGCGGTGTGGTTTTTATGAAGCCCAATAATTTTAGAGCTCATTTTAAGATAGTGCACACGAATGATCATTTTGAATGCCCTAGTTGCGAAAAGAAATTTGATTCGAAGTATGTTTTGGATAGGCATATGGTTGTTCATTCTAATGAGAGGTTGTTCTCTTGCGATGTGTGCTCAAAGTCTTTTCCAAGGAAGTATACGTTGAGGCAGCATATGTGGATACACAGTGATGTTAAACAATACGAATGTAAGCTATGCGATAAACAGTTTAATCAGAAACTAGGAGTGCATCCGTACAAATTTGTAGATGATAAAATTATGTGCGGCGTCTGCGATGCTAAGTTCCCTGGCATGAGACAACTGGGTCGTCATATGTCGTCACATTTTATGAACTTCTATTGCGAGTTCTGTGAATTGGAACCACATATAATGGCGAAAAGGAACGCGGAGGTAGTGTTACAATACTCAACAGTGTATCCGTTCAGATTACGTGGGAAGGCATTCCTATGCGTCTATTGCTGCGAGGGGTATGAAGACCCCACACATTTTAGGAGACATGTTGATACTCATCACACCAAGTTCACCGTATCTACAGCATTCGCACACATAGGCAGCGCCAAAGATTTTCTCAAAGTAGACTGCACAAACTTAAAATGTAGGATATGTTCCGATCCATTCCCCACAATTGATGAAGTTGCTGAACATCTTTTAAAAGTTCACGAAAGTAAACATATTCGTAAATTGAATCTTAAACATGAAATTGGTATGCAGCCCTATAAACTCGAAAAAGACAAATGGGTATGCTTTCTATGCAACAAAAAGTTACCCAGCGTTACTCAACTTTGTCGCCACACAACTTCACATTACCAGCAGTATACTTGTGATATATGCGGCAGAAGTTATTTAACTAATGAAGCTCTAAAATATCACATACGATGCAGTCACACGGGAAACTTTGTGTGTCGGAAATGCTGGAAAGATTTCTCAACGGCAGAACAGAGAAGAGAACATATAAGATTGTCGAAACCTTGCTGGGCTTTCGGGTGCATTTACTGCGGAGACAGATTTCAATCTTGGGAACAGAAACAAAAACATTTAGTTGAAAATCACGAGTGCCCTGAAACTAACTACCCTTGTCCTGAATGTGACCTCGTTTTTCAAACTCGAAAACGTTTTTATAACCATTACAAAGTAGCTCATACAGACGAAGCTTTAGTTTGTTCTTGTTGCGGCTTGAAATTTGTGACGAAGAATCAATTGGAAGATCATCGGTTAGGGCATACAGGAGAGAAACCATTCAAGTGTCCAGTCTGTTCTAAGGCTTTCACACGTAATAAGAGTTTAGCGCAACATATGTGGATTCATAGTGAAACTAAAAGATTCGTGTGTATGCTATGCGAAAAGCAATTTGCTCAGAAAGTTAGTTTTAAAGGGCATATGAAGGCACATCATCCAGAAGTCAATTTAGAGTTTTGA
- Protein Sequence
- MYIAKRNAQTVMQNATVYPFRLPESSIVCVYCCDNFDDGPLFRTHMDTNHKNVNIKVAYSHLNEGFIKADCTNIKCRICSQPCDNVDEVAVHLNDKHNKKIIMHFGVGIQPFRMEKDKLSCAICDTKCSNIRSLSRHIHGHFFQCTCELCGKSFATSTSLQKHIEFSCPLVPKQRRCRKCKIVLYSSEEHKKHLELSRNCRQHLCSVCGDRFSNWKLKRHHMEEAHAVPKKVYPCPECGVVFMKPNNFRAHFKIVHTNDHFECPSCEKKFDSKYVLDRHMVVHSNERLFSCDVCSKSFPRKYTLRQHMWIHSDVKQYECKLCDKQFNQKLGVHPYKFVDDKIMCGVCDAKFPGMRQLGRHMSSHFMNFYCEFCELEPHIMAKRNAEVVLQYSTVYPFRLRGKAFLCVYCCEGYEDPTHFRRHVDTHHTKFTVSTAFAHIGSAKDFLKVDCTNLKCRICSDPFPTIDEVAEHLLKVHESKHIRKLNLKHEIGMQPYKLEKDKWVCFLCNKKLPSVTQLCRHTTSHYQQYTCDICGRSYLTNEALKYHIRCSHTGNFVCRKCWKDFSTAEQRREHIRLSKPCWAFGCIYCGDRFQSWEQKQKHLVENHECPETNYPCPECDLVFQTRKRFYNHYKVAHTDEALVCSCCGLKFVTKNQLEDHRLGHTGEKPFKCPVCSKAFTRNKSLAQHMWIHSETKRFVCMLCEKQFAQKVSFKGHMKAHHPEVNLEF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -