Scos034677.2
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997848.1:8084812-8110258[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.062 7.6 8.5 0.6 1 20 219 238 219 240 0.94 2 19 0.65 81 5.3 0.1 2 23 268 290 267 290 0.93 3 19 2.2 2.7e+02 3.6 3.3 1 23 313 335 313 335 0.97 4 19 0.0016 0.19 13.5 0.8 1 23 339 361 339 361 0.98 5 19 0.016 1.9 10.4 1.2 1 23 366 389 366 389 0.92 6 19 0.11 13 7.7 0.3 2 23 397 419 396 419 0.93 7 19 0.0026 0.32 12.8 8.4 1 23 426 448 426 449 0.95 8 19 0.0087 1.1 11.2 0.8 1 23 455 477 455 477 0.96 9 19 2.7e-06 0.00034 22.2 2.5 2 23 484 505 483 505 0.96 10 19 6e-05 0.0074 18.0 4.6 1 23 511 533 511 533 0.98 11 19 0.11 14 7.7 0.7 1 23 626 649 626 649 0.95 12 19 0.29 36 6.4 0.2 2 23 675 697 674 697 0.93 13 19 0.0081 1 11.3 2.5 3 23 721 741 719 741 0.96 14 19 0.00042 0.052 15.3 0.3 1 23 745 767 745 767 0.97 15 19 0.0037 0.46 12.3 0.5 1 23 774 797 774 797 0.97 16 19 0.002 0.25 13.1 1.3 2 23 805 827 804 827 0.95 17 19 2.6e-06 0.00032 22.3 0.8 2 23 833 855 832 855 0.97 18 19 1.7 2.1e+02 4.0 1.0 1 23 861 884 861 884 0.89 19 19 1.8e-05 0.0022 19.6 1.7 1 23 890 913 890 913 0.98
Sequence Information
- Coding Sequence
- ATGACCTCCGTAATGAATGGTATGTGTAGATGTTGTGCGACGGAAGGAGTGTATAAAGACATTAAAACTTCGTATACATGGATGGGCGAGGAAGAGGTCTACGCCGACATGTTGAGAGAATGTTTCGATTTATGTTTAAGCACATCGGAGGGCGTTGAAGACGGAGGCATATGTGAGGTATGCATCACCCAGCTACGCAACGCTGCCAATTTTAAGAAGCAAGTTCAAAACACTGAGGAACAATTTAAGAAACTCGCTCTTAACAAATTGTTTAAACCTAATATAGTGAAGGTGGAGGCGGATGAAGAGGATGCTGGCAATGATTCTGATGACAACAATGCTTCAGCTGACGAGAGTTACTCTGGACcagaaTATGAAGTACCAATTAAAACTGAAACTGAAGATCCCAAGCCGAGAAAGCGTGCTGTAACACCTAGGGCAGCTAAGGCCAGTACATCTCGGGCCAAGAAATCTAAGGCCGATAATGGAGAACCGTCTACTAAACGAACGGACGGTGTCCCGCCCAAACGCAAGAAAAGGAAAAAGAAATCTGATGAAAGCGCTACGCCGGAACGAGTTGAGCACAGGGTCAACTTAACAACCATACTACAGTACTCCAACGCTAGCCCGTTTAGGGACAAGACAATCAAGGGCTTCTCATGTCTCTATTGCTCTAAATACTTCTACGATATACAATCATTAAGAGAACACACAGCACAACAATctgaaaaagacaaaattaacACTATTATAGATTATAAACTCAGCTATAACCCTATCAAAGTGGACATAACAGATCTCAGATGCACCGTATGCAATCTAGAAATGAGAGATCTCGTAGACTTAAAGGATCATTTAGTttctatacataataaaactatatataaacatataaaagaCATTATATTACCTTTTAGACTTGAAGACGGACACAATTTTACATGCGTCATATGTTCGGTAGTACacatatcttttaaaaatttataccACCATATGAGCAGTCATTACAGGAACTATTGCTGCAAGAAATGTGGTGCTGGATACATCACAATAGCGGCCCTAAGAAAGCACGGAAAGACACACGCACAGGGTATATTCCCTTGTGATTTTTGCGATAAATCATACACGTCTTTGACTAAGAAGAGGAATCACGAGAAAGGAGTCCATACAGGTGGATGGCTCCGCAACAAATGCCAATATTGCCCGCAAATATTCGTCAGCTACTACGATAGAAGCGAACATTTAGTCAAAGAGCATAACCAAGCACCGGTGTTCTACCCATGCAATGCCTGTCATAAGACATACAAAAAGAAATTCGAACTGAACAGACATATAAAACATCACCATTTGCAGCAAAGGAGTTACCTCTGCGATAAATGCAATGCTAAATTCTTTTCCAAAAGAGGTTTGGCCGATCATCTGTCGAGGCATAATGGGGTTGAAATGTGTTCGTGTAATATTTGCGGTAGAAACTTTTCTAGAGCAAGAACTTTAAAGGAGCATATGAAAGTACACGAAGACGATAAAAGGTTCCAATGTGAAATATGCAAGAAGACTTTTATGCAAAAATGCAGTTTGAAAAGTCACGTGAGATTGCATCAGGACGATTTGGATATTTTCAAAGAATTTGACGATGTCAAACATTTGATAGATAATAGAGAGTTGACCCTCAAGCAAATTGCCGCCGAGAgcGCTACCGGAGCTACAAAAAAACAACGCAAACGCGCTGTTAAGGAGGAAAACGAGGACGAACcgttaagtaatattatatatcGTGAAAAGCATCTGCCTGAGATGAAGAAGCAATGGCATAATCTGATCACCTTACTCAATTGCTCAAATGTTACCCCATTCAAGGATAGAAACGATGCCGGATATATATGCGCTTTCTGCTTCAAAACATACCCTAACCCAGATATACTTAGAAATCATACCCACATAGATCACGCTAAAGAAAAACCTTCGTACAAAGCTGGCTCCGGGATGGCAAGCTTTGTCGCCTTCCTAGACATTGTCGATCTCAAATGTACGCTCTGCGACCAATCAATGGAATCATTGCAATCACTTACTGACCATTTAGTTTCAATACACGATAAGAAATATTACACAGTCACAGATTATTTCCAACCTTTCAAATTAACTAACGAACAGCAGATCAACTGCTGCATTTGCAACGAGCCATTTCACAATATGAAGCTGTTGATGCAGCACATGAATATACATTACAGAAACTTCATTTGTACCATTTGTGGCGCCGGATTCGTTAACTCATTTCGTTTGAACAGACACGAAACAACGCACGGAAAGAAGAAGTCTAGCTACCCTTGCCGGCATTGCGGGCAAGTATTCGCTGCGGAATCAAAGAAGAAAGCTCACGTAAACACGGAACATAAAGGCATAGCAGGAGATAGTGTATGCCAAATTTGTAAAGCCAGATTCAAGAATTATTACCAGAAGACCAGACACATGATGCAAGTCCATAACGCTGAAGGGATTAAATGTGATCTCTGcgataaaaagtttaatttgaAATCAAATCTGATGCTTCACATGAGAAGTGTACATTTAAAAGAGAGACCCTATGAGTGCTCAGTCTGCAGTATGGGCTTCTTTATAAAAAGGCACATGTTGGGACACTATATGGCTACGCATACGAACGAGAGGAAGTTCAAATGTGAGGTATGCGGTAAAGCTTATGCTACGCAGAATAGTAAACGGAAACATATGAAGAAGAATCATGgtatatttaagaataatatGATGCCGGTTAACAGGACTGCGGTAGATAATAAGACTTGTGTAGAAAATAAGATCAATGATCACAAATATTCGGTTGATTATGAATCTGCTGTTGATAACAAAACTGTTGGGTTCTTGAGGCGAGATGTCTGA
- Protein Sequence
- MTSVMNGMCRCCATEGVYKDIKTSYTWMGEEEVYADMLRECFDLCLSTSEGVEDGGICEVCITQLRNAANFKKQVQNTEEQFKKLALNKLFKPNIVKVEADEEDAGNDSDDNNASADESYSGPEYEVPIKTETEDPKPRKRAVTPRAAKASTSRAKKSKADNGEPSTKRTDGVPPKRKKRKKKSDESATPERVEHRVNLTTILQYSNASPFRDKTIKGFSCLYCSKYFYDIQSLREHTAQQSEKDKINTIIDYKLSYNPIKVDITDLRCTVCNLEMRDLVDLKDHLVSIHNKTIYKHIKDIILPFRLEDGHNFTCVICSVVHISFKNLYHHMSSHYRNYCCKKCGAGYITIAALRKHGKTHAQGIFPCDFCDKSYTSLTKKRNHEKGVHTGGWLRNKCQYCPQIFVSYYDRSEHLVKEHNQAPVFYPCNACHKTYKKKFELNRHIKHHHLQQRSYLCDKCNAKFFSKRGLADHLSRHNGVEMCSCNICGRNFSRARTLKEHMKVHEDDKRFQCEICKKTFMQKCSLKSHVRLHQDDLDIFKEFDDVKHLIDNRELTLKQIAAESATGATKKQRKRAVKEENEDEPLSNIIYREKHLPEMKKQWHNLITLLNCSNVTPFKDRNDAGYICAFCFKTYPNPDILRNHTHIDHAKEKPSYKAGSGMASFVAFLDIVDLKCTLCDQSMESLQSLTDHLVSIHDKKYYTVTDYFQPFKLTNEQQINCCICNEPFHNMKLLMQHMNIHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSYPCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNAEGIKCDLCDKKFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCEVCGKAYATQNSKRKHMKKNHGIFKNNMMPVNRTAVDNKTCVENKINDHKYSVDYESAVDNKTVGFLRRDV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -