Scos034894.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- ZNF296
- Assembly
- GCA_905475405.1
- Location
- FR997848.1:10627504-10638619[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.87 1.1e+02 4.9 0.0 3 23 113 133 111 133 0.95 2 14 0.0023 0.28 13.0 3.2 1 23 264 286 264 286 0.99 3 14 1.2e-05 0.0015 20.2 0.4 1 23 292 315 292 315 0.96 4 14 0.2 24 6.9 4.1 1 23 320 342 320 343 0.94 5 14 0.0001 0.013 17.2 0.5 2 23 502 523 501 523 0.98 6 14 1.6e-05 0.002 19.7 1.2 1 23 529 551 529 551 0.98 7 14 0.53 66 5.5 0.1 1 23 648 670 648 670 0.97 8 14 0.0038 0.47 12.3 4.0 1 23 676 698 676 698 0.95 9 14 0.00041 0.051 15.3 0.7 1 23 704 726 704 726 0.98 10 14 0.00061 0.075 14.8 2.1 1 23 735 757 735 757 0.98 11 14 0.00066 0.082 14.7 3.0 3 23 805 825 804 825 0.97 12 14 0.004 0.49 12.2 3.2 1 23 842 864 842 864 0.96 13 14 1.7e-06 0.00022 22.8 0.7 1 23 870 892 870 892 0.98 14 14 1.8e-07 2.3e-05 25.9 3.1 1 23 898 921 898 921 0.98
Sequence Information
- Coding Sequence
- ATGAATCACTCAATAGTAGATTTAGATCCGTTAAGCAACTACGATTACCCAGCATATGATAGTTACCCAATTACCCCCGCTGTACCGTACCAATTTAATGTTAAACTCGAAAATTCCATATACTACAATAATACTAATGAAAATACTAGCAATATTAACTATATCTTACCAAATAATATACCTCAAGAAGAAACTTCCAATCAAGAACAAGAAATAAACATTGAACAAACGGACAAAACAGAAGACACTAAACCTATAGTTAACGGTAAGAAGAGAAAGAACGCAAAGAAATACTGCTCGGAGAAGATCAACGATGCCACATTCCCGTTCTACGGCTGTTCAATATGCAATATAAGTTACGTAGCACTAAATGAATTAGACAGTCACGTTACCATACATAAAAACAGAATGACCAGCTACCGATTAAGAATACGGaatcaaattaaaaagaaacagaaaaaattaaaacttaaaaagataaaaaaggaAAAGGAATTAGAATTAGAAATCAAACCGGAAGATGGTTATATAGGTAATGAGAAAGCTGTAGATTATAACGAGAACGGTAGTGAAATTGTTAATAATAGTAGTATAAGTGGTGTAACGGATAACAGTAGTAGTTTAACAGATAACGATAGGATAAAAAATGAAACGAATACTTCCAGAGTTAACGTTAATGATGAAAATGTAAACCAGAATAATGAAACGGGTGATAAGAACGATGAGACGGTTGAAAAGAAAGATGATGGAGAAGTTAACGAGGAAGAAGCAAAGAATTTGGAGAAGATATATAAATGTTTTGCGtgtaaaaagcaatttactttaagttattatttaaagttacaCGTTAGATCTCATACAGaTGAAAAGCCCTACCCATGTAGTGTATGCGGGCAGTCGTTTATAACTGCAAGCAAGCTCAGTAGACATAATAAGAGAATACATTTAGCCGAACGATTCCAATGTagaatatgttttaaaatattttctagATTTGAAATTCTTACAAATCACTTTGATAAACACCATCCAGAAGATAAACTAGAAGGGGAACCGTACgATTACAACGCCATCTTACCATATCTTAAGGAACTAGAGGAACAGTTGAGGGAGCAAGCGGAGGCTAAGGAACAGAAGAAGGACGATGTTTGGTTTGATTGTGGATTGGATGACCAGAATACAGATATAAAACATGAGaCTAAAACCGAGGTAGAAATACCTCTTGAGCCTAAAAACGAAGTTTTAATGGAAGAAGTAAAATTGGATACTTACGACTTAGACGTCAAGATAAAGGAGGAAATTGAAGAATTGGATGTCGAACCACCCGGAGATGACTTTAGGGATGATATGGACTATCCTGTGGATGAAAAGTTGGATGAGAAAGAGTTTAAGGAAGAcagTTTCTCCGACGAAGACTATTTCCCATCAAACACATGGGCAGCAACACCAAAATGCGATCCATCCCCACCACATTCGCCTAAACCCAAGAAGTCCACTGTTAAGACATGCGAGATATGCCAGAAAGAGATAAGTTCAGCTTCGTATATGCGCGTACATATGCGCACACATACAGGGGAGAGACCGTTCAAGTGTTATATGTGTGGGAGGGGATTTATCACTAGCAGTAAGATGAATAGGCATGTCCTGACACATGAGAGCGATGgtaaAGAAAAAATTGAGAATGAAAACGGCGAAGTTAAAACGGAGGACGGTGTGAAGGAAGGAGATGATTGTGATAATTTAGACAAAAGTGAAATCAGTGGGATAACaacaacaaaaaagaaaaagaaattaaaaaagaatttgAACGATAATACAGAACAGAAGGTTAAGAAAAAACATCAAAAGAGGCCGCACTCATGCGAGTATTGTAATCAAAAattCTTACATTTAAACATGCTGGAGGTCCACAAGAAATGTCATGAGGGTGAGGAACTGATCTTCAAATGTCAGTTCTGCCTGGAGGAGGCCATCGATAGCACTGCGCTAAAGGAACACGAAGCGACACACGAGGGACCCAAGCCCTATCTCTGTACCATATGTGGGAAGACTTATAAGAAACGGGAGACTATGATCTACCACCGCAAACACCACCAAGGCGAGCGGGAATACATTTGCGACATTTGTTCGAAGCGGTTCAACGCGGCTTGTAAACTCGCCAAGCACATAGCGACCCACCGCAGTGAACAGTACGTCCTCCGCTACGAGTGTCCGGTGTGTGCGCATATGTTTAACACTAAGTATCATGTTCAGATGCATTTGGCCACGCATCAGAGGGAGGGACTCCTCTTAGAATCGAATCGCAACGAAGTGTTAGCCATGGTGTTACAAAACGCACTCAAAATACCGAAGCAACCTGACGCGGCCGCCAATCTGACTGACATAACACCTTCAGACgaaagatACAGAATATGCAAAATATGCGGAGAAACCTTTCACCATTTCTATTATCTAGAAGAACACCTAAAAAGCCACGGTTCCAAAATAGCTATCGACGACACGAACAAATCCGaagaaaagaaatatatatgCGAAATTTGCAATAAAGGTTTTAaactacattattatttaaaattacacaGTTTTACACATACGAAAGAGAAACCATTTATATGCCAGCAGTGTGGAAAGGGCTTTATAACTAAAGGGAAATTAAAAAGGCATTTAGAAACCCATTCTGGCCTTAAGAAATACCAATGTCATATATGTTATAAGTTTTTCACTAGGCCCAGTTATTTAAGAATACATATTAGGACAATTCATGGGACTCACTATAATTTTAGGCcggataaaattattaatttgggTGCTATGTCCGCTATGACTCATTTTTCTGATAGCCAGACTAGTGTGTGA
- Protein Sequence
- MNHSIVDLDPLSNYDYPAYDSYPITPAVPYQFNVKLENSIYYNNTNENTSNINYILPNNIPQEETSNQEQEINIEQTDKTEDTKPIVNGKKRKNAKKYCSEKINDATFPFYGCSICNISYVALNELDSHVTIHKNRMTSYRLRIRNQIKKKQKKLKLKKIKKEKELELEIKPEDGYIGNEKAVDYNENGSEIVNNSSISGVTDNSSSLTDNDRIKNETNTSRVNVNDENVNQNNETGDKNDETVEKKDDGEVNEEEAKNLEKIYKCFACKKQFTLSYYLKLHVRSHTDEKPYPCSVCGQSFITASKLSRHNKRIHLAERFQCRICFKIFSRFEILTNHFDKHHPEDKLEGEPYDYNAILPYLKELEEQLREQAEAKEQKKDDVWFDCGLDDQNTDIKHETKTEVEIPLEPKNEVLMEEVKLDTYDLDVKIKEEIEELDVEPPGDDFRDDMDYPVDEKLDEKEFKEDSFSDEDYFPSNTWAATPKCDPSPPHSPKPKKSTVKTCEICQKEISSASYMRVHMRTHTGERPFKCYMCGRGFITSSKMNRHVLTHESDGKEKIENENGEVKTEDGVKEGDDCDNLDKSEISGITTTKKKKKLKKNLNDNTEQKVKKKHQKRPHSCEYCNQKFLHLNMLEVHKKCHEGEELIFKCQFCLEEAIDSTALKEHEATHEGPKPYLCTICGKTYKKRETMIYHRKHHQGEREYICDICSKRFNAACKLAKHIATHRSEQYVLRYECPVCAHMFNTKYHVQMHLATHQREGLLLESNRNEVLAMVLQNALKIPKQPDAAANLTDITPSDERYRICKICGETFHHFYYLEEHLKSHGSKIAIDDTNKSEEKKYICEICNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITKGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHIRTIHGTHYNFRPDKIINLGAMSAMTHFSDSQTSV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -