Scos034714.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997848.1:8387294-8398655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.015 1.9 10.4 0.2 1 23 88 111 88 111 0.95 2 20 0.52 65 5.6 0.8 2 23 138 159 137 159 0.95 3 20 0.08 9.8 8.1 1.5 1 23 180 202 180 202 0.99 4 20 2.8e-05 0.0034 19.0 1.0 1 23 206 228 206 228 0.98 5 20 0.0074 0.91 11.4 0.6 1 23 262 285 262 285 0.92 6 20 0.7 86 5.2 0.1 1 23 334 356 334 356 0.89 7 20 5.1 6.3e+02 2.5 0.1 2 23 380 402 379 402 0.91 8 20 0.0065 0.81 11.6 1.4 1 23 424 446 424 446 0.98 9 20 0.0013 0.17 13.7 1.0 3 23 452 472 450 472 0.95 10 20 0.0078 0.97 11.3 0.2 1 23 480 503 480 503 0.95 11 20 4 5e+02 2.8 1.0 1 12 509 520 509 524 0.78 12 20 0.084 10 8.1 0.0 2 23 636 658 635 658 0.94 13 20 0.0078 0.97 11.3 3.8 1 23 680 702 680 702 0.96 14 20 0.00015 0.019 16.7 0.6 1 23 706 728 706 728 0.98 15 20 0.0061 0.76 11.6 0.4 1 23 733 756 733 756 0.90 16 20 8.3e-05 0.01 17.5 2.1 1 23 762 785 762 785 0.98 17 20 0.073 9 8.3 1.2 1 23 792 815 792 815 0.95 18 20 0.0056 0.69 11.8 3.9 1 23 821 843 821 843 0.90 19 20 1.6e-06 0.0002 22.9 1.1 1 23 849 871 849 871 0.99 20 20 4.7e-06 0.00059 21.4 2.2 1 23 877 899 877 900 0.95
Sequence Information
- Coding Sequence
- ATGTTAGAAAAAGTCTTAAAAAGTGATCCCTTTTGTTTAGAAAGGTTAGGTTCCGCTATCATTGCGGAGGGGGTAGGAGTAAGACGCGTTAGGAAGTTAAAGGAGAATGTAAGCGCAAGGCAACTACGCAGGCGCAGAAGAGCGAACAACGAACTCCCTGAAGAGTCTGAGAAAAGAATTTCCAAGACCATGATGAGGAGAAACGCCTTAATTCTTCTCGAATGTTCCACTGCTTGGGCGTTTAGATGGTTCCATAGCGCGTTTTACTGTTCGTATTGCGATGCAAAATATGTTGATGTACCTCTTCTAAGATCACACGTTAAAGCTAATCATCTTAATGAAATGCCAACTCAAAGAATATTCTCTAAATTAACGGAGAACAATATGGTTAAAGTAGATATTGCAGAATTAAGTTGTAGATTATGTCATAGATTTTTAAACGGTATTGATTCCTTGAAAGATCACCTTTTGATACACGGCAAGACTTTGAATGTCAACTATAGTGACGGCGTCCTTCCATTCAAATTGGATGAAGAATACACATGCCAGATATGCTTTGCTCAATTTCTCAATTTTTCCAAAATGAACGAGCATATGAATACGCATTATCAGAACTACATATGCGATTCTTGTGGCAAAGCATTTGTGTCTAAATCTAGGTTCAGAAAACACGTGCAATCACATGAAAAAGGGAACTTTCCTTGTGGAGATTGTGAAGAGATTCTAGAAACTAGAGCAGCCAGAATGTGTCATAGAATGAAAGTACACAGAAAAGGCATTAGATACGCGTGTCCAAGATGCCCTGAAGTATTCACTACCTATCACACAAGAGCTAAACATTTAATAGATAATCATGGACATCAAAGAAAGGAATACTATTgGCACGTCGAACACAATGTAAAATGGCGGCCGAGGCGCAAGTTTAACGATCACAGAGATAACGCTGCTATCATAATTGAGTGTTCCAACGTTTGCCCCTTTAGATGGAAGAGGGGGGCATTCATTTGCGCTTACTGCCCTCTCACATTCGGGGATTTTAACGGAATCAGAGACCATGTGATCGATCACCCCAATAGAGTTGAAGCGATGCGTCTCGCACGAGCTTACGCCAATCTAAAACTTGAAATCACGGGGCTGAGATGCGAATTGTGCCTCGAATCGAAAGAAAATTTAGACGATCTTACCGATCACTTAATATCGATACATAACAAGTCGATTAATAAAGACCTAGGGTTAGGAGCAACACCTTTTCTTTTAACCGGAAAAGAGTTTACATGTACACTATGTGGAGATACGTTTGAATTGTTTTCTaaattgaatacccatttaaACAAGCATTCCCCTAACAGTATATGCTTTCTGTGCGGCAAGTCATTCTCTACCATCCATAGGTTTACAGCACACCTCGCTATCCACGAATCTAATGATAGTAATCAGTATAAATGTGGTAAATGTCCAAGAGAATTTATGACTAAAGCTGCTAGGAACAGCCACGTAGCACGTGTCCATGGCAAAGAATTTAGATACAGATGTCCTTATTGCAATGATTACTTCAAGAGTTACGCAGATAGGGGAAGAAAAACTGTAACGGAGGATCCCACAGAGATTGTTATAAAGGAAGAAGTGGAATCAGACACAGAGAATAACAAAGACTCTATAATAACTACCGCCAGTGAAGGACGCGAGAGACGGGCCGCCTTCAGAAACAACATAGCTATCATACTCGAAACATCCACAGCTTACCCGTTCAAATACAGAAAAGGCACGTACCTCTGCTACTTCTGTAAAAACACCTTCCTAGAACCAGAGAAACTAAGGGAACACAATCTAATACAACATTCTCAAATGAACGAGCTGCTTAAACCAAGAAAGTATGAACCTATCAAAATGGATTTCGCTACTACCGTTTGTAAGATCTGCGGTATAGAGATAGAAGATTATGCCATGTTGAAGGTCCATCTAACTGTAGAACACGATAGGATTATAGATTGCACTTACGGTGAAAGTATATTACCTTACAAGTTAAGTAAAGAGGAACATAACTGCCAAATATGCGGCAAGACATACGAAATGTTTTTGAGCTTACACAGACATATGAATGACCACTACGAACATTTTATTTGCGAGACTTGTGGTAAGCGTTTTGCTACATCGCAGAGGATGGTCAATCACGCGAGAACGCACGAGCGTGGCGAATTCCTCTGTAAAAAATGTACAGAAATATTTTCATCGTATTCAGCACTATATGCCCATAATGCTAGAGTACACAGATCCAATAAAAGATACAAATGCCCAATATGCGATGAGAAATTTGCGTCGTACAAGCATAGGTTGAAGCATTTAAATACGATTCATGGTGAAAAAACTGCCTTGTTCCCATGCCCTTCTTGCCCGAGAGTTTTCGATTTGTGCAGTAGAAGAACTGCACATATTAGATTTCAGCATCTTCAAGAACGAAATCACGTTTGCTCTATATGCGGAATGAAGTTTTTCACTAAATATGAATTACAAGAACATTGTATTAAGCATAATGGTGAAAGGATATTCCAGTGTGATGTTTGTAAGAAATCTTACGCGAGATTAAAGACTTTAAGAGAACATATGAGGATCCATAATAATGATAGGAGATTTATTTGTCCTGTTTGTGGGCAGTCGTTTATTCAAAATTGTAGCTTAAAGCAACACGTTAGAGTTCATCATCCTACGTCTTTAAaagatgttttttaa
- Protein Sequence
- MLEKVLKSDPFCLERLGSAIIAEGVGVRRVRKLKENVSARQLRRRRRANNELPEESEKRISKTMMRRNALILLECSTAWAFRWFHSAFYCSYCDAKYVDVPLLRSHVKANHLNEMPTQRIFSKLTENNMVKVDIAELSCRLCHRFLNGIDSLKDHLLIHGKTLNVNYSDGVLPFKLDEEYTCQICFAQFLNFSKMNEHMNTHYQNYICDSCGKAFVSKSRFRKHVQSHEKGNFPCGDCEEILETRAARMCHRMKVHRKGIRYACPRCPEVFTTYHTRAKHLIDNHGHQRKEYYWHVEHNVKWRPRRKFNDHRDNAAIIIECSNVCPFRWKRGAFICAYCPLTFGDFNGIRDHVIDHPNRVEAMRLARAYANLKLEITGLRCELCLESKENLDDLTDHLISIHNKSINKDLGLGATPFLLTGKEFTCTLCGDTFELFSKLNTHLNKHSPNSICFLCGKSFSTIHRFTAHLAIHESNDSNQYKCGKCPREFMTKAARNSHVARVHGKEFRYRCPYCNDYFKSYADRGRKTVTEDPTEIVIKEEVESDTENNKDSIITTASEGRERRAAFRNNIAIILETSTAYPFKYRKGTYLCYFCKNTFLEPEKLREHNLIQHSQMNELLKPRKYEPIKMDFATTVCKICGIEIEDYAMLKVHLTVEHDRIIDCTYGESILPYKLSKEEHNCQICGKTYEMFLSLHRHMNDHYEHFICETCGKRFATSQRMVNHARTHERGEFLCKKCTEIFSSYSALYAHNARVHRSNKRYKCPICDEKFASYKHRLKHLNTIHGEKTALFPCPSCPRVFDLCSRRTAHIRFQHLQERNHVCSICGMKFFTKYELQEHCIKHNGERIFQCDVCKKSYARLKTLREHMRIHNNDRRFICPVCGQSFIQNCSLKQHVRVHHPTSLKDVF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -