Scos034667.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997848.1:7997341-8004794[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0043 0.53 12.1 2.8 1 23 10 33 10 33 0.95 2 20 1.5 1.8e+02 4.1 0.6 2 23 64 85 63 85 0.95 3 20 0.0084 1 11.2 2.3 1 23 106 129 106 129 0.97 4 20 0.0026 0.32 12.8 0.2 1 23 134 157 134 157 0.92 5 20 0.00017 0.021 16.6 3.2 1 23 162 185 162 185 0.97 6 20 0.7 86 5.2 0.9 2 23 191 213 190 214 0.93 7 20 4.2e-05 0.0052 18.4 5.2 1 23 221 244 221 244 0.98 8 20 0.0011 0.14 13.9 0.5 1 23 250 272 250 272 0.97 9 20 0.00043 0.054 15.3 2.6 1 23 278 300 278 300 0.97 10 20 0.63 77 5.3 0.4 1 23 360 383 360 383 0.91 11 20 2.2 2.7e+02 3.6 6.1 1 23 502 525 502 525 0.93 12 20 0.013 1.6 10.6 1.4 3 23 552 573 550 573 0.91 13 20 1.2 1.5e+02 4.4 2.2 2 23 596 618 595 618 0.93 14 20 0.0022 0.27 13.0 0.0 1 23 624 647 624 647 0.94 15 20 4.6e-06 0.00057 21.5 0.3 2 23 653 675 653 675 0.96 16 20 0.25 31 6.6 0.9 2 17 681 696 680 703 0.78 17 20 0.00028 0.035 15.8 1.2 1 23 710 733 710 733 0.95 18 20 0.0004 0.049 15.4 0.3 2 23 740 761 739 761 0.93 19 20 0.00088 0.11 14.3 3.1 1 23 767 789 767 789 0.98 20 20 8.5e-06 0.0011 20.6 1.0 1 23 795 817 795 818 0.95
Sequence Information
- Coding Sequence
- ATGCCTTTCCGAAAAAATGGCAATACGTTCAGATGCTTTTATTGTAATTCTGACTTCTATTACGCATCCGAATTGCGAAAACATACAAAAGATAACCATAAAACGGAAACGAAAAAGCAAATTAAACAGACGATAAACAAAAATGTCAGCAAAAAGAATCCCTTCGTGAAACTGGACGTGACAGACATAACATGCAAACTGTGTATAGTTAAATTTGACAATTTCAAAGATCTAGTTGCCCactttaaaaatcacaataaaaaaTTAGCAGAAAATTTAGACAATATGATATGCTTGAAACTGTCGGATCACGAATTCAAATGCCTCTACTGCGATCAGGAATTCGCTTTCTTCAAATTATTATACGCACATATACACCGGGAACACGTTCAAAGGAGATTTATATGTGAAAATTGCGGTATTAACTTCACGACAAAACAAGGATTGGGACAGCACACCGCTTATGTACATAATCAGGGGGAGTTTATCTGCCATGAATGCAGCAAAAAGTTCGCTGCAAAACATCTCCTTTCAGCCCATATCAGGCGCTCCCATGACGCTGAAAATCTTAAATGTAAAGTTTGTAATTCTGTTTTTGGGAGTGTCATGCAAAAAGCGACTCACATGGCTAAAGACCATCACATATGGCTGACAAAAGAGTTTAAATGCGGACATTGTGagaaaagttttaaatataaccaCATGATGGCAAGACATATACGTCGTGTGCACATCAAAGAAAAGAACTTCGAGTGTGACATATGCGGGGATAAATTTTTCGATAAAAAATTGTTGGAATATCATCAGATTAGTCACTCGAATGAGAAGCCTTATGAGTGcaaattttgttttaagaaGTTTCCGAGAAAGAATGCACTTTATAGACATGAGAAAGGACACGATAACAAGCTGGTCTCTAAAAGGGGGTTGTCAAAATTTAATGGAGGGGGAAAGAAGGGAGGAGGGAAAGCGCAGCATAAAATAATAGAGGAACGTCGCAGAGATCAGCTTGCTACTCTCTTAGCTCTCATATTTCAAAGTACCACCATTATGCCGTTCCGGTGGCAGAAAAGTCAATTTATGTGCTACTACTGCCGGACTTTATTCGTAGAAAGCGTGAAACTAAGAGAACACAACGAAATAATACATCAAGAAACAAATATGGAATCTGTTATAACAAGAACAATGTACAGaaggaataaaatcaaaatcgATATCACAGATCTCTGGTGTTCTCGATGCGAAAATCAATTCGATAATTTTATCGATTATTTCAATCATTTATCTGATATTCACGAAATTAGTATCGATAAAGAGACTTGTGATGATTTCGAATGCTACAAATTGGCTGATGACGGAATGTCCTGTTTGGATTGTGATTACGAAACTGTGATAGCAGACGAGAAATACGCTGAAAAGCAACGGAAGGATGACCTCACACGCCTCGTAACATTAGTGCTCGAAAACTCTAACATAATGCCGTTCCGTTGGGCAGCAAACAAGTACATGTGCTTCTTTTGTTGCTGCACCTTCGTTGATAGCTCCAAATTAAAACAGCACACTCTAGAAGAGCACAAAGACGCTAAATTACGACGCGTACTCAGAACTCTACTCGGCAGTAGTCGCATCAAATTAGACACTTCAGAAATTAACTGCAAAAGATGCCCAAAAAGATTCGAAAACTTTGACAGTTACCTAAATCACATACACGATGTTCATAATCTTAAATTCAATAGAGAAATATCAAGATGCATCTTCACATTCAATTTATCTGACGACGGTATGTCTTGTAGGGAATGCAAACAGGAATTTAGGTTCTTCGGACCTTTATTAAAACACGCACACAAGTACCACAATCAGTATAAAACTTACCTCTGCGAAATATGTGGGCAAGGCTTTGTCGCAAAAGCAAATGTTGAAAGCCATATTAAAAATGTACATAGTTTGAAAGATAGGCAGTGTTATAAATGTGATAAAGTGTTTAGAAATCCTTACGCGTTGCAAGTACATATCGAGAGATCACACAAAACGGAATCGCTTAAATGTCCAAAATGCCCTGAAGTTTTTGGGTcgaaatatttgaagaaatGTCATCTTGCTTTGGTTCACGATGTTAAAAAGCTACAATTTAACTGCGACGAATGTGATAGAGTATTTACAATGAAGAGTAGATTGGTGCAGCATAAGTTAAGGACTCATTTGAAGCAGAAGACGGTTTCCTGTGAGATATGCGGCTTCAAAGTTTTCAACAACGATCTTCTGAAGCGTCATATGGTTCGACATGATGATTCTAGGCCGTTTCAATGtcaattttgtatgaaaagttttCAGAGAAAGAAGACGCTGGAGGTTCATACTAGGATACATACGAATGATCGGAGGTATGCTTGTAAAGAGTGTGGGAGGGCTTTCGTCCAGGTCACTAGTTATAAGCTTCATATGAGAGTGCACCACGGGGGTAACGAAGGGTCTTCTTGGAACTGA
- Protein Sequence
- MPFRKNGNTFRCFYCNSDFYYASELRKHTKDNHKTETKKQIKQTINKNVSKKNPFVKLDVTDITCKLCIVKFDNFKDLVAHFKNHNKKLAENLDNMICLKLSDHEFKCLYCDQEFAFFKLLYAHIHREHVQRRFICENCGINFTTKQGLGQHTAYVHNQGEFICHECSKKFAAKHLLSAHIRRSHDAENLKCKVCNSVFGSVMQKATHMAKDHHIWLTKEFKCGHCEKSFKYNHMMARHIRRVHIKEKNFECDICGDKFFDKKLLEYHQISHSNEKPYECKFCFKKFPRKNALYRHEKGHDNKLVSKRGLSKFNGGGKKGGGKAQHKIIEERRRDQLATLLALIFQSTTIMPFRWQKSQFMCYYCRTLFVESVKLREHNEIIHQETNMESVITRTMYRRNKIKIDITDLWCSRCENQFDNFIDYFNHLSDIHEISIDKETCDDFECYKLADDGMSCLDCDYETVIADEKYAEKQRKDDLTRLVTLVLENSNIMPFRWAANKYMCFFCCCTFVDSSKLKQHTLEEHKDAKLRRVLRTLLGSSRIKLDTSEINCKRCPKRFENFDSYLNHIHDVHNLKFNREISRCIFTFNLSDDGMSCRECKQEFRFFGPLLKHAHKYHNQYKTYLCEICGQGFVAKANVESHIKNVHSLKDRQCYKCDKVFRNPYALQVHIERSHKTESLKCPKCPEVFGSKYLKKCHLALVHDVKKLQFNCDECDRVFTMKSRLVQHKLRTHLKQKTVSCEICGFKVFNNDLLKRHMVRHDDSRPFQCQFCMKSFQRKKTLEVHTRIHTNDRRYACKECGRAFVQVTSYKLHMRVHHGGNEGSSWN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -