Scos034681.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997848.1:8137022-8140905[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0044 0.55 12.1 0.5 1 23 3 26 3 26 0.94 2 18 0.024 2.9 9.8 0.3 2 23 52 74 51 74 0.96 3 18 4.4 5.5e+02 2.6 3.3 1 23 95 117 95 117 0.96 4 18 0.021 2.6 10.0 1.2 1 23 121 143 121 143 0.97 5 18 0.093 12 7.9 2.4 1 23 148 171 148 171 0.96 6 18 0.21 26 6.8 0.2 1 11 177 187 177 200 0.87 7 18 7.3e-05 0.0091 17.7 0.2 2 23 208 230 208 230 0.97 8 18 4.2e-05 0.0052 18.4 9.2 1 23 236 258 236 258 0.97 9 18 0.0027 0.34 12.7 2.4 1 23 319 342 319 342 0.93 10 18 0.0097 1.2 11.0 0.2 2 23 368 390 367 390 0.96 11 18 0.00021 0.026 16.2 4.7 2 23 413 434 412 434 0.97 12 18 0.00011 0.013 17.2 0.4 1 23 438 460 438 460 0.98 13 18 0.0047 0.58 12.0 0.5 1 23 465 488 465 488 0.95 14 18 0.077 9.5 8.2 4.9 1 23 496 519 496 519 0.93 15 18 0.0013 0.16 13.8 0.7 2 23 527 549 527 549 0.97 16 18 0.0034 0.41 12.5 7.2 1 23 555 577 555 577 0.95 17 18 1.1e-06 0.00014 23.4 0.4 1 23 583 605 583 605 0.99 18 18 0.00029 0.036 15.8 5.6 1 23 611 634 611 634 0.97
Sequence Information
- Coding Sequence
- ATGGGTTACATGTGTTGCTGGTGTGAAGAACAATTCCCTAAACCTGCAGATCTAAAGAACCACACGTTAGAAAGCCACCGTAACCTCGATAATGCCTGTTTTATGAAATTTAACATGGATAACCTCATTGTACGTCTAGATATAACAACTCTTCAATGCAAGATCTGCATAAAAGACCTTGATAGCTTAGATCAGTTACTTAAACATCTAAAAACAGATCACGAAAGACCAATCTATGACATTCAAAACAGAATAACTCCTCTAAAATTTGATACAGACATGTTCCAATGTTGTATTTGCAATAATATCGTAAGCAAATTCAAAGTACTTCTCGAACATATGCATTTACACTACAGGTATTACATATGTAAGATTTGCGATTCCGGTTATGCTTGCAAAAGGAATCTTAGACTTCACATGAATGGGCACAAGACTGGTACGTTCAAATGTGATCACTGTTCTCAAATATTCGACACTGTTGTCAAAAAAAAGTCCCATGAAAGATCAGTACACGCTCAAAAAAGGGCATACAAGTGCGGTTACTGTCATGTAACTTTTACAGAACTTAAAATTAAAGAGGCTCATTTAGCAGCTATACATGGAGTAATAATGCCTAAAGCTGAATGTCAAGTTTGTCTTAAAGTTTTCGACGATCGGGCACAGCTTAATATGCATATCAGAAGGGATCATCTATTAGAGAGGACACACCAATGTACCGAATGTGGTAAATGCTTCTTCTATTCAACGCATTTGAAGAGGCATATGGTTAAACATACCGGCGTTAGAGcttttaaatgTGTACGTACTATAAAGATAACAATTGGAAATATATCAACCAGCGAAGAGAAAGGAGATGTAGAACTCTTAACAAATATAAAGAAgaatagaaataatattaaagaagtATTGCGGTATTCGAACGCTACGCCGATAAGAACCGTTGGAGATTTAGGATACGTATGCTCCTATTGTCATGATAAGTTTAAAAAAGCAGCTGAGTTAAAGAAACATACACTAGATACTCATAAAGATATTGACAAAGCTTTCTTTATGAAAACAGATATGGCGAGATTCGTAGTCAGACTTGACATCACTTTACTTAAATGCAACATTTGTAATCAAACTATAGATACATTAGAAGAACTTATGGGACATCTTAAATCAACACACAATAAAACCATTTACACAGATATTAAAAATCATATCATTCCTTTAAAATTTACAACAGATGAGCTGAAATGCTGTATatgcaataaaacattttctaaatACAAGAAACTCCTTGAACATATGAACTCGCATTATATGAACTATATATGCGATGTATGTGAAACAGGATTTGTAACACGTATGAACTATAATCAACACCAGCTCACACATAAAACTGGCACATTCGAATGCAACAATTGTAGTCAAGTATTCGATACATTAGTCAAAATGAAATCGCATGAACGTGCAATGCATTCTCTAAAACCACCGAAATTACATAAATGTGGTATTTGTCATGAAAGTTTTACCGATTACAGAAAGAAGGAAACTCACTTGTTTGTAAAACATGGTAAAGATATCCCTAAAGCTCAGTGCAGTGCCTGCGAAAAAATATGTTCAAGCAAAAACGCTCTAGCAGCTCATATAAGACGAGACCATTTGTTGGAAAGGCGTTTTCGGTGTTCGATATGCGATAAAAGCTTTTTTACTATGCATTGTTTGAAACGTCATTCGGTGAAACATACGGGATTGAGGAGTTTTAAATGTACCGTATGTCCTAAGGCCTTTGGTAGGCCATTTACTTTAAGGGAACATATGAAGATACATAATAATGTCAGGGATTTCAAATGTGATCATTGTGGACAATCTTTTGTACAGAAATGTAGCTGGAAGGGTCACATGAAGAATAAGCATGGAGAGAATATTTAA
- Protein Sequence
- MGYMCCWCEEQFPKPADLKNHTLESHRNLDNACFMKFNMDNLIVRLDITTLQCKICIKDLDSLDQLLKHLKTDHERPIYDIQNRITPLKFDTDMFQCCICNNIVSKFKVLLEHMHLHYRYYICKICDSGYACKRNLRLHMNGHKTGTFKCDHCSQIFDTVVKKKSHERSVHAQKRAYKCGYCHVTFTELKIKEAHLAAIHGVIMPKAECQVCLKVFDDRAQLNMHIRRDHLLERTHQCTECGKCFFYSTHLKRHMVKHTGVRAFKCVRTIKITIGNISTSEEKGDVELLTNIKKNRNNIKEVLRYSNATPIRTVGDLGYVCSYCHDKFKKAAELKKHTLDTHKDIDKAFFMKTDMARFVVRLDITLLKCNICNQTIDTLEELMGHLKSTHNKTIYTDIKNHIIPLKFTTDELKCCICNKTFSKYKKLLEHMNSHYMNYICDVCETGFVTRMNYNQHQLTHKTGTFECNNCSQVFDTLVKMKSHERAMHSLKPPKLHKCGICHESFTDYRKKETHLFVKHGKDIPKAQCSACEKICSSKNALAAHIRRDHLLERRFRCSICDKSFFTMHCLKRHSVKHTGLRSFKCTVCPKAFGRPFTLREHMKIHNNVRDFKCDHCGQSFVQKCSWKGHMKNKHGENI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -