Scos034682.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997848.1:8145495-8148098[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0045 0.56 12.0 1.5 1 23 3 26 3 26 0.95 2 20 0.13 16 7.5 0.1 2 23 53 75 52 75 0.95 3 20 0.6 75 5.4 6.9 2 23 98 119 98 119 0.97 4 20 0.23 28 6.7 0.9 1 23 123 145 123 145 0.98 5 20 0.0078 0.97 11.3 1.1 1 23 150 173 150 173 0.95 6 20 0.37 46 6.0 1.9 1 23 179 202 179 202 0.90 7 20 0.00043 0.053 15.3 0.8 2 23 210 232 210 232 0.97 8 20 0.00011 0.014 17.1 2.9 1 23 238 260 238 260 0.95 9 20 4.4e-07 5.4e-05 24.7 3.5 1 23 266 288 266 288 0.99 10 20 0.17 21 7.1 2.8 1 13 294 306 294 307 0.92 11 20 0.011 1.3 10.9 0.7 3 23 375 396 373 396 0.91 12 20 0.23 29 6.7 0.1 2 23 422 444 421 444 0.94 13 20 0.00066 0.082 14.7 0.6 2 23 467 488 466 488 0.96 14 20 0.015 1.9 10.4 0.1 1 23 492 514 492 514 0.98 15 20 0.0026 0.32 12.8 2.6 1 23 519 542 519 542 0.96 16 20 0.3 37 6.3 1.1 2 23 550 572 549 572 0.92 17 20 0.00022 0.027 16.2 2.0 2 23 580 602 579 602 0.95 18 20 2e-05 0.0025 19.4 3.3 1 23 608 630 608 630 0.98 19 20 2e-05 0.0024 19.5 0.7 1 23 636 658 636 658 0.99 20 20 8.3e-05 0.01 17.5 4.7 1 23 664 687 664 687 0.97
Sequence Information
- Coding Sequence
- ATGGGGTATATGTGTTGTTTCTGTAAAGAAGAATTCATACAACCAGCTGATTTAAAAGAGCACACATTAAATAAGCATGAAGACATTACCAAAGCTTACTTTAATAAAGATCTTCCAATGGATAGATACTTCATTAAACTTGATATCACTAATTTGCAATGCGTCATCTGTGATCTTAACGTTGATACAATAGAAGAACTCCTAAAGCATCTTCATTCAGAACATGATAAGAATATATACCTGGATATCAAAAACCATATAATACCTTTCAAATTTAATACTGAAATGCCCGAATGCTGTATTTGCTCGAATAAGTTCAGCAAGTTCAAGAAACTTCAGGAGCATATGCATTCTCATTACAGAAATTACGTGTGCGAATTCTGTGGCGTAGGGTACTTCAATTTTCTTTCATATCGACTCCACAAACTGACACACCAGATCGGTATCTTCAAATGCGACTATTGCACACAAGTTTTTGACACGAAGCCAAAAAGGGCCACACACGAGAGACAAGTACATAGGAACCCAGTAATTTTCAAATGCGGATTTTGTAGCGAATTTTTCAAAGATTACAGAAAGAAAGAGGCacatttagttttaaaacatGGCGTATCAATACCTACTGCTAAATGTCAGTCTTGCGATAAAGTTTTTGGTGATCGTAATAAGCTACAAATACATGTAAAAAGAGTACACTTAATGGATAAGCCACACAAGTGTGATGACTGTGAAATGAGCTTCTGTTCGAGTTCGGAATTAAAAATTCATGCAGTCAAACATACAGGTGTAAAAGATTACAAATGTAGTGTATGCGGGAAATATTTTTGCAGAAAGAAAAATTTAGCTGAGCATATGAAAATACATGACGATGTGAGAAGGTTCAAATGTGAACATTGTGGGCAAGCTTTTGTACAGAAATGTCCCGGCCGGGGTACTAGAGTTATCAGAATAGAAAGACCAACAAGTTCTACTGTTGAACTCAAGTTTATATCCAAAAGAATTAGCCGAGACGGTACCACGCGTTCAGTTTCTGAAACAGTCAAGAACAGAATCAATCTAACTAACATATTACTTAATTCGAACGCCAATCCCATACGATGTAAAGACAGCATAGGATACGGCTGCACATTTTGCTTAAAAAAATTCCCCGAACCAACTAATCTGAAGAAACATTTCCTCGAAGAGCATAACAATGATAAACTTATTAAATATATGTCAGCTAAACTATTAGAATATGTCATAAAACTTGacataacatacttaaattgcGCTCTATGCGATAAAGACATTGAGAACTTAGACGATTTCATAATTCATTTGAAGAATGAACATAAGAAACAAATGTATTTAGAAGTTAAAAACCATATTGTACCCTTTAGATTCGATACAGCCGAATTAAAGTGCGCTATTTGCACGACAGAATTCAACACGTTTAAACTTTTACAAGAGCATATGAATTTACACTTCGGTAATTACGTATGCTATATATGTGGCGCGGGATTTGTAACCGAGAGATTACGAGCGTCTCATGTCAAACGACACGGTAACGGTGAATTTAAATGCGAACAATGCGATAAAACATTTGACAGTCAGCTAAAGCGACGCGATCATGTTAAACGTACACATTTAGGTCAGAGCGCACGAAACAAATGCAAATTCTGTTCGGAAAGATTTGTTGACTATTGGAAAAAGATGAATCATATGGTACAAGAACATGGTGTGCCTCCGGTTGTACTTAATTGTACCGCGTGCGATCGTACTTTCAACAACCAAAGATCATTGTCACGGCACACGAAAAAGGATCACCTTTTGGAGCGAAGGCACAAATGCAACGAATGCGATATGAGATTTTTCGGTAAAAGCAGTCTGCAGAAACACATGGCAAAACATACGGGGATAAGGCAATTCAAATGTGATGTTTGCTTAAAAGCTTATGGAAGGAAAAATACTCTGAAAGAACACATGAGAATACATGCTAACGACAGGAGATTTGCTTGCAAACATTGCGGGCAAGCTTTTGTACAAAAGTGTAGCTGGCGAAGTCATATGCGATCGAAGCACGGAGAGGAGGTGTAG
- Protein Sequence
- MGYMCCFCKEEFIQPADLKEHTLNKHEDITKAYFNKDLPMDRYFIKLDITNLQCVICDLNVDTIEELLKHLHSEHDKNIYLDIKNHIIPFKFNTEMPECCICSNKFSKFKKLQEHMHSHYRNYVCEFCGVGYFNFLSYRLHKLTHQIGIFKCDYCTQVFDTKPKRATHERQVHRNPVIFKCGFCSEFFKDYRKKEAHLVLKHGVSIPTAKCQSCDKVFGDRNKLQIHVKRVHLMDKPHKCDDCEMSFCSSSELKIHAVKHTGVKDYKCSVCGKYFCRKKNLAEHMKIHDDVRRFKCEHCGQAFVQKCPGRGTRVIRIERPTSSTVELKFISKRISRDGTTRSVSETVKNRINLTNILLNSNANPIRCKDSIGYGCTFCLKKFPEPTNLKKHFLEEHNNDKLIKYMSAKLLEYVIKLDITYLNCALCDKDIENLDDFIIHLKNEHKKQMYLEVKNHIVPFRFDTAELKCAICTTEFNTFKLLQEHMNLHFGNYVCYICGAGFVTERLRASHVKRHGNGEFKCEQCDKTFDSQLKRRDHVKRTHLGQSARNKCKFCSERFVDYWKKMNHMVQEHGVPPVVLNCTACDRTFNNQRSLSRHTKKDHLLERRHKCNECDMRFFGKSSLQKHMAKHTGIRQFKCDVCLKAYGRKNTLKEHMRIHANDRRFACKHCGQAFVQKCSWRSHMRSKHGEEV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -