Basic Information

Insect: Schrankia costaestrigalis
Gene Symbol: Znf296
Assembly: GCA_905475405.1
Location: FR997825.1:12714443-12725478[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.02 2.5 10.0 2.7 1 22 155 176 155 176 0.96

2 14 0.013 1.7 10.6 0.5 1 22 196 217 196 217 0.95

3 14 0.00047 0.058 15.1 1.3 3 20 232 249 230 253 0.93

4 14 0.0011 0.13 14.0 1.6 2 23 291 312 290 312 0.95

5 14 1.5 1.9e+02 4.1 1.1 3 23 383 404 382 404 0.89

6 14 0.0049 0.61 11.9 0.4 1 20 409 428 409 430 0.92

7 14 8.9e-05 0.011 17.4 0.7 1 23 438 461 438 461 0.97

8 14 1.3e-05 0.0016 20.1 3.2 1 23 482 504 482 504 0.98

9 14 2.8e-06 0.00035 22.1 4.2 1 23 511 533 511 533 0.99

10 14 2e-07 2.5e-05 25.7 0.8 3 23 547 567 546 567 0.98

11 14 8.3e-08 1e-05 26.9 0.8 1 23 573 595 573 595 0.99

12 14 6.7e-07 8.2e-05 24.1 2.7 2 23 602 623 601 623 0.96

13 14 4.5e-08 5.6e-06 27.8 1.5 1 23 629 651 629 651 0.99

14 14 0.0014 0.17 13.6 0.1 1 23 657 679 657 679 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.02	2.5	10.0	2.7	1	22	155	176	155	176	0.96
2	14	0.013	1.7	10.6	0.5	1	22	196	217	196	217	0.95
3	14	0.00047	0.058	15.1	1.3	3	20	232	249	230	253	0.93
4	14	0.0011	0.13	14.0	1.6	2	23	291	312	290	312	0.95
5	14	1.5	1.9e+02	4.1	1.1	3	23	383	404	382	404	0.89
6	14	0.0049	0.61	11.9	0.4	1	20	409	428	409	430	0.92
7	14	8.9e-05	0.011	17.4	0.7	1	23	438	461	438	461	0.97
8	14	1.3e-05	0.0016	20.1	3.2	1	23	482	504	482	504	0.98
9	14	2.8e-06	0.00035	22.1	4.2	1	23	511	533	511	533	0.99
10	14	2e-07	2.5e-05	25.7	0.8	3	23	547	567	546	567	0.98
11	14	8.3e-08	1e-05	26.9	0.8	1	23	573	595	573	595	0.99
12	14	6.7e-07	8.2e-05	24.1	2.7	2	23	602	623	601	623	0.96
13	14	4.5e-08	5.6e-06	27.8	1.5	1	23	629	651	629	651	0.99
14	14	0.0014	0.17	13.6	0.1	1	23	657	679	657	679	0.98

Sequence Information

Coding Sequence: ATGGCTACTTCTACAGAAATTAAAATTGAAGAGTTGTGTCGAACATGTTTgtctaaagataataatatgtattcaatTTTTGACAAACTAAGTGAAACCCtaacattacatattattgtgACTTCCATCACTGGATTAcagaTTGAAGAAAATGATGGACTACCATCAACCATCTGCTCAGTATGTAAAGAGGTTGCATCTAAGGCATTTGAATTCAAAAAGAAATCAGAAGAATCTTTTATAtctcttcaagaaatattaaaaaaggaaaatttagaTTGGACATCTATAGATGATTCTGTCAGCGATACTAATTCAATGGAAGTGAAGACTGAAGATGCCTCATTACATGATCATGAGTACAATGATagtaactttaatattaatctTACTAGTGGACCAGACTTAAATGAGATAGGAGATCTGAAATGTGAAATTTATGGAGAAACAAGTAAACCATACTATGAAtgtaaaaaatgtttgttgatatttaaaaatgaacatAAATATCAAGATCATCAAAGGAAAAAGTGTATTGGAAgaACACGAAGCAGTGCAATTGGAGTAATAAAAGGTGACCCATGCTATGAATGCAAAAAATGCTTAATAACATTTGAAACAGAAAATGAATATGAGGAACATCAGAAAAAGAAATGTattaaaattgaaTGTGAAGATTCAAGTAATACCTTTTGTCCATTATGTGGGACATGTTTTGAAGGTGAAGACAATTTAACAAAACATATGTGGAAGTACCACGCTGATATTATGGGTCCAAAGAAAAGAGGTAGACCTAAGAAAATATTAACAAGTACAATACTAGACAAATTATCGGAAAATGGATACTTTGTATCGtcattgaaaaaaatagaatgtTCTCTCTGCAAACAGTGTTTCAAAACCAAAGAAGAATTAGGTACTCATTTATTAGATCATAAAGACCTGAAGATGCTACGTTGTTTATTATGTAAGAAAAGCTATTTGGATAGAATAAACTTCGATCAACATAGTTGCATTGACAATAGAggCACGTCTAACTTGGATTCTAATAATAcaagaaaacaattaaatttctTATCAGAAATCACATTGGAAGATCTCATGCATTTAAATACCAATTTGgaAAACGTATTGTCACTTCAGATATGTAGCGCATGTAGttgtgtatttatttacgaaaaaGATCTGTTGAACCATCACGATGCAGAGCATCCTGAGCTATCACATCGTTGTAACATGTGTACAAAGgtaTTCGCCACTTTGAGATCAGCCGCTCGACACAGAAGTATATGTAAACAAGttgaaagaaaatataaatgttcGACATGTGGTCTTAATTTTGCTTATGAAATATCTCTAAACAAGCACATATTAAAGTACCACGAGGGCCAAAGTGTATCTATTAAGTTTATTGACACTAAAAGTAAAAGTGGCGACAGACAGTTCCAATGCGATATATGCAACAGATGTTTCTATAGACGAGACCTACTAGTTCAACATACTAAAATTCATACGCCAGGTGCGAAATGTTTTCAATGTGATGTTTGCGACAAAAAGTTTCATAGGAGAGATAATCTGCGTTCTCACAAACGTGTCCACGAGGTAGAAAGAGATAAGGGATCGTCTAGCACATCGCTGTGTCTGTACTGTGGACGTAATTTCTCCAACTCGTCCAACTTGATTGTTCACATGCGACGACACACCGGTGAAAAGCCTTACAAGTGTGATTTCTGTGGTAAAGGTTTCCCGAGATCTTCAGACTTACAATATCATATAAGATCGCATACTGGAGAGAAGCCATGCGTTTGTCGTGTTTGTGGTAAAGGTTTCTCACGTAGCAACAAGTTGACGCGTCACATGCGCGTGCATACAGGCCAGAGGCCGTACAAGTGCACGTACTGTGACAAGGCGTTCTCTCAGAGCAACGACCTTACTCTACATATACGAAGACATACGGGTGACAGGCCGTATATATGTGAAGTTTGTGGCGATCGATTTATACAGGGCACGGCTTTACAAAATCACAGAAGAGTTCACGGTCATTTTCAGCAAGCACCGCCAGAAAGAGAAAGTTtgcaataa
Protein Sequence: MATSTEIKIEELCRTCLSKDNNMYSIFDKLSETLTLHIIVTSITGLQIEENDGLPSTICSVCKEVASKAFEFKKKSEESFISLQEILKKENLDWTSIDDSVSDTNSMEVKTEDASLHDHEYNDSNFNINLTSGPDLNEIGDLKCEIYGETSKPYYECKKCLLIFKNEHKYQDHQRKKCIGRTRSSAIGVIKGDPCYECKKCLITFETENEYEEHQKKKCIKIECEDSSNTFCPLCGTCFEGEDNLTKHMWKYHADIMGPKKRGRPKKILTSTILDKLSENGYFVSSLKKIECSLCKQCFKTKEELGTHLLDHKDLKMLRCLLCKKSYLDRINFDQHSCIDNRGTSNLDSNNTRKQLNFLSEITLEDLMHLNTNLENVLSLQICSACSCVFIYEKDLLNHHDAEHPELSHRCNMCTKVFATLRSAARHRSICKQVERKYKCSTCGLNFAYEISLNKHILKYHEGQSVSIKFIDTKSKSGDRQFQCDICNRCFYRRDLLVQHTKIHTPGAKCFQCDVCDKKFHRRDNLRSHKRVHEVERDKGSSSTSLCLYCGRNFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQYHIRSHTGEKPCVCRVCGKGFSRSNKLTRHMRVHTGQRPYKCTYCDKAFSQSNDLTLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRVHGHFQQAPPERESLQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -