Basic Information

Insect: Schrankia costaestrigalis
Gene Symbol: -
Assembly: GCA_905475405.1
Location: FR997854.1:681882-686557[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.4e-07 9.2e-05 24.0 0.4 1 23 175 197 175 197 0.98

2 14 0.0096 1.2 11.0 5.0 1 23 203 226 203 226 0.96

3 14 2e-06 0.00025 22.6 0.5 1 23 232 254 232 254 0.98

4 14 3.2e-06 0.0004 22.0 2.3 1 23 259 281 259 281 0.99

5 14 3.5e-06 0.00044 21.8 3.4 1 23 287 309 287 309 0.99

6 14 7.8e-07 9.6e-05 23.9 1.1 1 23 315 338 315 338 0.95

7 14 1.6e-05 0.002 19.8 2.5 1 23 344 366 344 366 0.97

8 14 1.7e-05 0.0021 19.7 0.8 1 23 372 394 372 394 0.98

9 14 0.00029 0.036 15.8 1.8 1 23 400 422 400 422 0.99

10 14 6.5e-08 8.1e-06 27.3 1.3 1 23 428 450 428 450 0.98

11 14 3.5e-06 0.00043 21.8 3.5 1 23 456 478 456 478 0.98

12 14 0.12 15 7.5 2.9 1 23 484 503 484 503 0.94

13 14 2.5e-06 0.00031 22.3 0.4 1 23 509 531 509 531 0.98

14 14 0.00024 0.029 16.1 4.0 1 23 537 559 537 559 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.4e-07	9.2e-05	24.0	0.4	1	23	175	197	175	197	0.98
2	14	0.0096	1.2	11.0	5.0	1	23	203	226	203	226	0.96
3	14	2e-06	0.00025	22.6	0.5	1	23	232	254	232	254	0.98
4	14	3.2e-06	0.0004	22.0	2.3	1	23	259	281	259	281	0.99
5	14	3.5e-06	0.00044	21.8	3.4	1	23	287	309	287	309	0.99
6	14	7.8e-07	9.6e-05	23.9	1.1	1	23	315	338	315	338	0.95
7	14	1.6e-05	0.002	19.8	2.5	1	23	344	366	344	366	0.97
8	14	1.7e-05	0.0021	19.7	0.8	1	23	372	394	372	394	0.98
9	14	0.00029	0.036	15.8	1.8	1	23	400	422	400	422	0.99
10	14	6.5e-08	8.1e-06	27.3	1.3	1	23	428	450	428	450	0.98
11	14	3.5e-06	0.00043	21.8	3.5	1	23	456	478	456	478	0.98
12	14	0.12	15	7.5	2.9	1	23	484	503	484	503	0.94
13	14	2.5e-06	0.00031	22.3	0.4	1	23	509	531	509	531	0.98
14	14	0.00024	0.029	16.1	4.0	1	23	537	559	537	559	0.98

Sequence Information

Coding Sequence: ATGTCGTATTTATGGGATGCGAACCATTTATGCCGCTGCTGTCATGCGGAAGGTAATTTTAAGAGCGAAAATGTATTTGCATCTGATGAAAATTTCGAGTTGTTGAAAGAAACCTTTAACATTAGCATAAACACAACCGTTCCATACAAAGTATGTGACATTTGTGAGCCGAGGTTGAAAGACGCAGTTTTATTCAAGAAGCAGGTGATTGCTTGTGAAGATAAGCTGAgagatattttatataattgtgAATTTAAAGATGGTGGTGTGTACCAAAGAGATGTTAAAAATGAGCTACAAGATGgtGTGAAGACTGAATCAGTTTTAGATAACAAAATAGATATTAAATATGATAACATTTTCCTACAAGAAGATGATGATCAACCGTTATCAACATTACGCAGTGTTAAGAGACTGGAGACAGACTGTGAGGAGATACAGGATGATGTAGACCAGGACTGGCCCCAACAGGAGTATAGTGAagACGAAGacacaaaacaaaagaaaacaccCCGAAAAAAGTACTCATGTGACATATGTCAAAAGCAATTCTCATACAACGGTTCACTAGAAGTTCACATGAAAGTTCACAGCGGAGAGAAATCGTTCACGTGTCACATTTGCAACACTAGACATACCAACAACAAAGAACTAACCAAACACATAACAATAACACACATAGTCGACAATCAATACCCGTGCAATGTCTGCGAAAAAACATTCGAAAAGGCCCGTCTactaaaaaaacatataaaaatacattacgaAGAAAAATTCAAATGCACGGAATGCCAAAAAGAATTTCAAAGAAAGAAAGGCTTGAAAGAACACATGAAAGTTCATACTGGTGAAAGAAAATATACATGCAATGTATGCCAAAAGTCTTTTGGGCATAATCAAACTTTGAAATCGCATATGCTAACACATACGGGCGAAAGACCTTATGTCTGCGATGTCTGCGGACGACGATTCCCTCAAAGAACGCACCTTAAACGGCATATATTTATCATACATACTGGCGTTAAACCACATTCTTGTAATGTGTGCAATAAACAGTTTTCCAGTAAAAGCTATTTGGCAATTCATGAAAGACAGCATACAGGGGTAAAACCGTATTCTTGCGAAGTGTGCAAGAAAGATTTCACTGCATATACGACTTTGAAAGTGCATATGCGCGTCCATACAGGTTTTAAGCCGTATACATGCGGCTTTTGTAGCCGACAATTCGCACAAATGGCTAGTTTTAAACTTCACCAACGAACGCATACAGGCGAAAGACCTTTTTCATGCAAAGTGTGTAAAAAATCTTTTTCGGATAATGGTTATTTGAAAATTCATATGCGGGTACATTCTGGTATTAAGCCGTTTTCTTGTGAAGTGTGCAAGCGGTGTTTTAGGGAAACGGGACAGTTGAAAAGGCATATGCGTGTCCATACCGGGATAAAGCCTTATACATGTAAAGTTTGTAATAAGCAAATAGGTAATTTATCCAAGCATATGCGTGTACATTCTGATGTTAGGCCTTTTAGTTGTGGGGTCTGTAATAAACAGTTTTCTATTAATGGAAATTTGAAATTGCATATGCGTGTTCATACGAACGAGAGGCCGTTTAGTTGTGATGTGTGCAGTAGTCAGTTTACGCAGAGTAGCGGTTTAAAGAGGCATAGGTGTACGCATATTGGGAAAAATGATGATTTGAATGGATGA
Protein Sequence: MSYLWDANHLCRCCHAEGNFKSENVFASDENFELLKETFNISINTTVPYKVCDICEPRLKDAVLFKKQVIACEDKLRDILYNCEFKDGGVYQRDVKNELQDGVKTESVLDNKIDIKYDNIFLQEDDDQPLSTLRSVKRLETDCEEIQDDVDQDWPQQEYSEDEDTKQKKTPRKKYSCDICQKQFSYNGSLEVHMKVHSGEKSFTCHICNTRHTNNKELTKHITITHIVDNQYPCNVCEKTFEKARLLKKHIKIHYEEKFKCTECQKEFQRKKGLKEHMKVHTGERKYTCNVCQKSFGHNQTLKSHMLTHTGERPYVCDVCGRRFPQRTHLKRHIFIIHTGVKPHSCNVCNKQFSSKSYLAIHERQHTGVKPYSCEVCKKDFTAYTTLKVHMRVHTGFKPYTCGFCSRQFAQMASFKLHQRTHTGERPFSCKVCKKSFSDNGYLKIHMRVHSGIKPFSCEVCKRCFRETGQLKRHMRVHTGIKPYTCKVCNKQIGNLSKHMRVHSDVRPFSCGVCNKQFSINGNLKLHMRVHTNERPFSCDVCSSQFTQSSGLKRHRCTHIGKNDDLNG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -