Scos040429.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schrankia costaestrigalis
Gene Symbol
PRDM7
Assembly
GCA_905475405.1
Location
FR997855.1:1394121-1403710[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.6e-05 0.002 19.8 3.1 2 23 393 414 393 414 0.97
2 21 1.1e-05 0.0014 20.3 5.7 1 23 420 442 420 442 0.99
3 21 3.7e-08 4.5e-06 28.1 1.0 1 23 448 470 448 470 0.99
4 21 1.6e-08 1.9e-06 29.2 1.0 1 23 476 498 476 498 0.99
5 21 2e-06 0.00025 22.6 0.4 1 23 504 526 504 526 0.99
6 21 9.8e-06 0.0012 20.4 4.4 1 23 532 554 532 554 0.99
7 21 6.4e-07 7.9e-05 24.2 2.8 1 23 560 582 560 582 0.99
8 21 1.1e-05 0.0014 20.3 1.2 1 23 588 610 588 610 0.98
9 21 1.4e-05 0.0017 20.0 2.0 1 23 616 638 616 638 0.99
10 21 8.9e-07 0.00011 23.7 0.4 1 23 644 666 644 666 0.99
11 21 2e-08 2.5e-06 28.9 0.8 1 23 672 694 672 694 0.99
12 21 2.7e-06 0.00034 22.2 0.2 1 23 700 722 700 722 0.99
13 21 3e-08 3.7e-06 28.3 0.8 1 23 728 750 728 750 0.99
14 21 8e-09 9.9e-07 30.2 0.8 1 23 756 778 756 778 0.99
15 21 1.5e-05 0.0019 19.8 3.4 1 23 784 806 784 806 0.99
16 21 2.4e-08 3e-06 28.6 1.4 1 23 812 834 812 834 0.99
17 21 1.1e-07 1.4e-05 26.5 0.8 1 23 840 862 840 862 0.99
18 21 4.8e-07 6e-05 24.5 1.3 1 23 868 890 868 890 0.98
19 21 2.3e-07 2.8e-05 25.6 2.3 1 23 896 918 896 918 0.99
20 21 2.3e-07 2.9e-05 25.5 1.0 1 23 924 946 924 946 0.99
21 21 0.018 2.3 10.1 0.6 1 15 952 966 952 968 0.88

Sequence Information

Coding Sequence
ATGCCAGGACGCACGCTTCGTCAGAAAACACGCGTCTCTTACTACGAGCCTGAAGAGCCGGCGCTAGACGAATATATTTTTTGTGAAGAATGTTCAGACTACGTGTTCGAGTACTGCGCTATACATGGACCACTGCTTGTTATACCAGACGACAAGCTGTCGTCCAAGAACAGCGTCCCTGCGATAGTGCCTCGCGCCGCGCTCACCATACCTCACGTGTTCCTGCACCTGGCGCCCTCCTACATACCTGGCGCGGGTATAGGCGTGTTCAGCACCCTCACACTACCGCGCGGAGTCCGCTTCGGTCCGTATCGCGGACAGCGGACTGACGGCGTCGACTCTAAGTACTGCTGGCAGATATACGATCGCAACAACAAGCGGTCGCACGTCGTAGACGCGGCTGACTCACAACAGTCAAACTGGATGCGCTACGTGAACTGCGCCAGACACTGGAGGGAACAGAACCTTGTCGCCTTCCAGTACAAGGGACAACTGTATTACAGAACTATTAAGATTATTCCTCGTTTCACGGAGCTGCTAGTGTTCTACGGCAGTGAGTTCGCTAACTCATTGCACATCGATCTTGGAGCTTACAACGCGCCGAAGGGATATGCTCGTAAATTCGGTGCTCCTAAAAAACCGAATCAAAAGGAAAACTATGAAGATAATACACAAAACAAACATAAGAAATGCAAAACTGTTGAAGCAAACAGTGAACAAGAcacagttataataaaaaaagcgattacaaaacgtaaaatacttattaaagaTAATGTTGATAATATCAAGAAACGTAAACACACTTTTGTTGCACCTACCATTAATTTACATAAAGAGAAGCCTGATACACCTCTGAATGTTGATACAAGTAATGTCAATGTAAACGTCGCGGATAAAACCATTACGAGACATAGAGTAATCGATGTtaagaataaaaattataataaacaaaatttagtAGCACCGATTAATAAGTTTTGCAGAGATATGCATGAGAAAAGAGCAAAGGAtattattgaaaatataaaTGATATTAGTTCCATAAACAAACTGACCACAAACATAAAACATGATAATGTAGAAATTGCTAATAAATGTAAAGAAAAGAAAGAGGTAACAGAAAATAAAGTAGATAGTAACAATAATGTTAATATTAGTAAAACGAAATTTAATGAATGCAGTGTTTGTCATAAAAGTTTTACTTCAAAAACTTATCTGGATAAACATTTACGTATACATACTGGTGAGAAACCATATAAATGTGATGTTTGTAATAAGAGTTTTAACTTTAAACATCATTTAGTAACTCATTTACGTATACATACTGACCAGAAACCATATACATGTGATGTTTGTAATAAGAGTTTTAAACGAAGTGATAGTTTAGTAACTCATATGCGTATACATACTGGCGAGAAACCATACAAATGTGATGTTTGTAATAAGAGTTTTAACCGCAATGATAATTTAGTAACTCATATGCGTATACATACTGGTGAGAAATCATACACATGTGTTATTTGTAATAAGAGTTTTACCGAAAATGGTACTTTAGTTAAACATTTACGTATACATACTGGTGAAAAACCATATACATGTGATATTTGTAACAAGAGTTTTAACCTTAAACATCATTTAGTACAACATTTACGTATACATACTGGCGAGAAACCATATAAATGTGATGTTTGTAATAAGAGTTTTAGCCAAAATTGTGATTTAGTAAAACATTTACGTATACATACTGGTGAGAAACCATATACATGTGATGTTTGTAATAAGAGTTTTAACCAAAAAGGTCCTTTATTAAGTCATATGCATATACATACTGGCGATAGTAGATATAAATGCgaaatatgtaataaatgttTTGCTACAAAAACTGCAATAAGTAGTCATTTACGTATACATACTGGTGAGAAACCATATAAATGTGATGTTTGTAATAAGAGTTTTAACGTAAGTGGTACTTTAGTAAGACATTTACGTATACATACTGGTGAGAAACCATATACATGTAATGTTTGTAATAAGAGTTTTAACGATAGAGGTAATTTAGTAAAACATATGCGTATACATACTGGTGAGAAACCATATACATGTGATGTTTGTAATAAGAGTTTTAACCGAAAAGGTCCTTTAGTAATACATTTACGTATACATACTGGTGAGAAACCATACAAATGTGATATTTGTAATAAGAACTTTAGCCAAAGTAGTGATTTAGTAAGACATTTACGTATACATACTGGTGAGAAACCATATAAATGTGATATTTGTAATAAGAGTTTTAGCCAAAGTAGTGATTTAGTAAGACATTTACGTATACATACTGGTGAGAAACCTTATAAATGTGATGTttgtaataaaagttttattcacGGTAATCATTTAGTTAAACATTTACGTATACACACTGGTGAGAAACCATATAAATGTGATGTTTGTAATAAGAGTTTTAACCAAAGCAGTACTTTAGTAAAACATATGCGTATACATACTGGTGAGAAACCATATAAATGTGATGTTTGTAATAAGAGTTTTACCGAAAGTAGTTCTTTAGTAAGACATTTACGTATTCACACTGATGAGAAACCATATATATGTGATGTTTGTAATAAGAGTTTTAATCAAAAACCTCATTTAGTAAGACATTTACGTGTACATACTGGTGAAAAACCATATAAATGTGATGTTTGTAATAAGAGTTTTAATCAAAAACCTCATTTAGTAAGACATTTACGTGTACATACTGGTGAAAAACCATATAAATGTGATGTTTGTAATAAGAGTTTTACCCAAAGTGGtgattttgtaaaacatttacgTATACATACTGGTAAGAAACCATATACATGTGATGTTTGTAATAAGAGTTTTAACGATAGAGttactttTGTAGAAGAAATGTACCTGTTGCCTGTTGAATTGTTAGGTACTTTAGTGTAA
Protein Sequence
MPGRTLRQKTRVSYYEPEEPALDEYIFCEECSDYVFEYCAIHGPLLVIPDDKLSSKNSVPAIVPRAALTIPHVFLHLAPSYIPGAGIGVFSTLTLPRGVRFGPYRGQRTDGVDSKYCWQIYDRNNKRSHVVDAADSQQSNWMRYVNCARHWREQNLVAFQYKGQLYYRTIKIIPRFTELLVFYGSEFANSLHIDLGAYNAPKGYARKFGAPKKPNQKENYEDNTQNKHKKCKTVEANSEQDTVIIKKAITKRKILIKDNVDNIKKRKHTFVAPTINLHKEKPDTPLNVDTSNVNVNVADKTITRHRVIDVKNKNYNKQNLVAPINKFCRDMHEKRAKDIIENINDISSINKLTTNIKHDNVEIANKCKEKKEVTENKVDSNNNVNISKTKFNECSVCHKSFTSKTYLDKHLRIHTGEKPYKCDVCNKSFNFKHHLVTHLRIHTDQKPYTCDVCNKSFKRSDSLVTHMRIHTGEKPYKCDVCNKSFNRNDNLVTHMRIHTGEKSYTCVICNKSFTENGTLVKHLRIHTGEKPYTCDICNKSFNLKHHLVQHLRIHTGEKPYKCDVCNKSFSQNCDLVKHLRIHTGEKPYTCDVCNKSFNQKGPLLSHMHIHTGDSRYKCEICNKCFATKTAISSHLRIHTGEKPYKCDVCNKSFNVSGTLVRHLRIHTGEKPYTCNVCNKSFNDRGNLVKHMRIHTGEKPYTCDVCNKSFNRKGPLVIHLRIHTGEKPYKCDICNKNFSQSSDLVRHLRIHTGEKPYKCDICNKSFSQSSDLVRHLRIHTGEKPYKCDVCNKSFIHGNHLVKHLRIHTGEKPYKCDVCNKSFNQSSTLVKHMRIHTGEKPYKCDVCNKSFTESSSLVRHLRIHTDEKPYICDVCNKSFNQKPHLVRHLRVHTGEKPYKCDVCNKSFNQKPHLVRHLRVHTGEKPYKCDVCNKSFTQSGDFVKHLRIHTGKKPYTCDVCNKSFNDRVTFVEEMYLLPVELLGTLV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01333385;
90% Identity
iTF_01333385;
80% Identity
iTF_01333385;