Scos002799.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997826.1:14830775-14832811[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-08 3.5e-05 24.7 0.0 2 40 16 54 15 58 0.90
Sequence Information
- Coding Sequence
- atgGTTAACAATTACAAACGCAAAACTACCCAGGCCTCGTGGGATGAAGCTATGATGGCCCGAGCAATTAAAGACGTTAATGAAAAGCGTGGCTCAGTAAAATGTATTGCAATAAAATACGGTATCCCTCGTACCACACTTAGACGACACCTGCAAACAGGATCAGCTATAAAGAAACTTGGCAGATTCACAACAGTCTTTACTCCAGAACAAGAAGATGAGCTCCTAGAGTACACGTTCCATATGGACAATCTGTTTTTTGGGCTTTCAAAGGAAGATTTCTTACAGCTTGTGTTTCAATACGCTGAAGCTAACCACATTCCACATCCTTTTAAGAACCAAACCGCTGGACACGATTTTTATAAAGGATTTATAACACGTCATCCCACTTTGACCTTGAGAAGACCAGAACCCACGTCAATCGCCAGAGCTCGGGGCTTTAACAAACCACAGGTGTATCGCTTTTTTGATCTGCTGGAAACCGAAATTGAAAAGCATAAAATTGACGCATTCCATATATATAATATGGACGAGACAGGAGTGCAAACCTCTTCTAACAAACCTCCAAGGGTTTTAACAAAGCTGGGCAAAAAACAAGTGGGTCACATCGCCAGTACCGAGCGAGGCAGAACAACAACAGTTATTTGCTGTTGTAATGCTGCGGGTTCCTTTATACCCCCTTTAATGATATTTGCAAGGAAAAGAATGGCACCGAACTTACTAGATGGAGCACCACCGGGCACTCAAGCAACTGTCAGTGATAATGGCTGGACCAATGGCGCTGTGTTCTTGGAGTGGCTTCGTTTTTTTATAGACACAGTCCGGCCAACAGCAGAGAAAAAAGTATTGCTCGTCATGGACAATCATGAATCTCATAAGTACTTGCCAGCTCTAGAACTCGCCTCCAAGAATcatgttatatttttgtcactGGCACCACATACTACACACCGTATGCAGCCACTAGATTGTTGTGTGTATGGGccattaaaaacatattttgagcGAAGTGTGGCCACATTCCAAAAAGCTCATGTGGGTCGGATAATCAACCAAAAAGATGTGGCTGGCTTATTTGGAACTGCCTATTTGCGAGCGGCAACAGCCCAGAATGCAGTGAGTGGCTTCGCAAAAACTGGCCTGTGGCCGCcaaatagatttgtttttgaTGATGCTGATTTCTTACCAGCAACAACCATGGAGAATCCGCCTGTTGTAGAAAACCCAACGCAATCTGGTAATCAAGAGCAAAGACAGACATTGCCAGTAGATGAAGACCCCTCAAGAACACCGTCTCCTTCGATTATTGATCAATTAATAATAGATAGAAATTATTCCAATGTATTATCTGGTTCGGTTATCGAACAATTTTTGAGTAATGAGCCGTGTACAATAGTGACTGGCTCTCAAAACCCACCAATTTCCCCTTCATCAGCTGAAAGACCTGGTTCGTCTATTCTTGATTCCCTAATGCTCAATACCGTCAGAGCAATTACTCCTAACGCTACAGTGAATTCAAAGGGACTCACAGCGCCAATAATTAGATCTTCACCAGTCAAAAATTCTTTGCCAGATAATGCATGTTACGTTAGCCCCATGGCAATAAAACCTTTGCCAAAAATGAAACCAAATATAACCACTCGACGAAGGAAAACTCAGCGGGCTGAAATTTTAACAAGCACCCCCATTAAGGACGAGCAAAGGGATAAATTAacgaaaaagaataaaacagATGCTAATAAGAAGAAAAGAGTAGTGAAGAATATGGGAAATTTGTTTGAAAAGCCAGGGTCATCCGGAACGCAAAAAAGAGCTAAATCTCGTACAAATACTAAAAGAGATAGGAATAATACACAAAAAACCAGCGATAATGTCACAAACCACAATTATTTTTGCCTGATTTGTTTGGAGCCATATGAAGACCCACCCGTAGAAGACTGGATTCGCTGTGATGACTGTCAGTTATGGGCTCATGAATCGTGTACGACATACTCCGGAACTGGAGCTTATTACTGTGATAATTGTCAAGAAATCTGA
- Protein Sequence
- MVNNYKRKTTQASWDEAMMARAIKDVNEKRGSVKCIAIKYGIPRTTLRRHLQTGSAIKKLGRFTTVFTPEQEDELLEYTFHMDNLFFGLSKEDFLQLVFQYAEANHIPHPFKNQTAGHDFYKGFITRHPTLTLRRPEPTSIARARGFNKPQVYRFFDLLETEIEKHKIDAFHIYNMDETGVQTSSNKPPRVLTKLGKKQVGHIASTERGRTTTVICCCNAAGSFIPPLMIFARKRMAPNLLDGAPPGTQATVSDNGWTNGAVFLEWLRFFIDTVRPTAEKKVLLVMDNHESHKYLPALELASKNHVIFLSLAPHTTHRMQPLDCCVYGPLKTYFERSVATFQKAHVGRIINQKDVAGLFGTAYLRAATAQNAVSGFAKTGLWPPNRFVFDDADFLPATTMENPPVVENPTQSGNQEQRQTLPVDEDPSRTPSPSIIDQLIIDRNYSNVLSGSVIEQFLSNEPCTIVTGSQNPPISPSSAERPGSSILDSLMLNTVRAITPNATVNSKGLTAPIIRSSPVKNSLPDNACYVSPMAIKPLPKMKPNITTRRRKTQRAEILTSTPIKDEQRDKLTKKNKTDANKKKRVVKNMGNLFEKPGSSGTQKRAKSRTNTKRDRNNTQKTSDNVTNHNYFCLICLEPYEDPPVEDWIRCDDCQLWAHESCTTYSGTGAYYCDNCQEI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01332546; iTF_01332547; iTF_01332548; iTF_01332549; iTF_01332550; iTF_01332544; iTF_00282275; iTF_00282276; iTF_00282277; iTF_00282278; iTF_00282279; iTF_00282280; iTF_00147390;
- 90% Identity
- iTF_01332546; iTF_01332547; iTF_01332548; iTF_01332549; iTF_01332550; iTF_01332544;
- 80% Identity
- iTF_01332546; iTF_01332547; iTF_01332548; iTF_01332549; iTF_01332550;