Scos016875.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997835.1:17898444-17901038[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-08 1.4e-05 26.0 0.0 1 42 4 44 4 47 0.92
Sequence Information
- Coding Sequence
- ATGGAGTATTCCGAAGAGGCCTTAAGGGAGGCTCTAAAAGATATAAGAGATGGCAAAGGAATTAGGGAAACATGCCGTTTCTACGGGATTCCGAGAACGACTGTTCAGGATAGGCTTAGCGGAAGAACGGCTGAAAAGCCAAGAAAAGTAGGACCTGATCCAGTTCTTGGGTTTTCTGGGGAAAATAAAATTGTGGAGTGGATCATACGGTCAGCAAAATGTGGTATCGCTATAAAAAAAGTGGATTTGATAGACACAGTCGCTGCTATCGCCAAAGACTTAAAGAAGGGGCACTGTTTTGCTGAAGGTAGACCAGGTCAAAAATGGTACCAAGGTTTTCTTAAACGACATCCGCAAATAAGTATACGAGAACCAGAAGCAATAAATAAAGCTAGAGAAGCTATAAAGGAAGTTAACATTAGAAAATGGTTTTCTGATTTAAAGGCATTTTTGACAGAGAGAGGATTTATTGATATTATGAGCGACCCGGACCGTATCCTAAATGGAGATGAGACTGGGGTGTCTTTATGTCCAAAAACTGGGAAAGTTTTGGCCCCAAAAGGATTCAAAAACTTATATGTTGTAAAAAAAGGAAACGAAAAAGAAACAATTACCGTGCTAATTACTATGACAGCTTCAGGTTTAATTTGTCCTCCGTTGGTAGTATATCCATACGTACGACCACCAAAGGCAGTCATCGAAAACACTCCTTCTGAATGGGTGATTGGAAAGAGCGAAACTGGGTGGATGAGAAGTGACGTTTTTTACGAGTATATTGCTAACGATTTCAACAAATGGttaatagaaaagaaaataaagaaaccaGTCATCCTGTTCGTGGACGGACATAAATCACATATGTCTATGCCTTTAAGTCACTTTTGTGAAGAAAACGGCATCATTTTGTACGCGCTTCCACCAAATACCACTCATATACTTCAACCTGCAGATGTGAGCGTGTTTCGACCTCTAAAGCAACAATGGAAGACAACAGTAAGAAATTGGCAGTGCAAACcggaaaatattaataaaaccatTACCAAAACTAACTTCTGCAGTGTATTTAAAGAAACTCTCGACGTAAACATGACGGAAACTATTATAAACGGTTTCCGTAAATGCGGATTATACCCATTCAACGTGGAAGCGGTCGATTTTACAAAATGTGTACGGGATGTCCAAATTCAAACTGCTATTCCTAAGAAGCTTGATCGAAACATCACTGACAGGCATTATCAAATAGctaaagatgttattttatctattagcaACAATCTTGCGAAGCGTGGAATAGACGCCAAGGTTGTTGATTGTGAAATAGAAAAGGCGAGAACAACTCATAAGCGTCCATCCAAATCCAAAACGCCCCGCAACTCTTCTTCCAAAACTCCTCGCAACTCTTTATCTAAAACGCCTCGCTGTTCCTCATCTGAGACGACTCGCAATTCTTTAACTGAATCGTCCATAAATCAGATTTCCAATACACCAAATATAAACTTACACAATCGTATTATTGAAATTGTTGACAGCTCTGTACCGAACATTGGGTCTATAGTTTCATTGGATGAACTATCGATTATACCCCTTGATGGAACTTATTCGGACATAAACTTAGATGTATTCTCAGAAGACATTACAGAAATTgagaataatttaaatattacagtTACTGCTGACATCCATTGTGAACCTGCGCTTTCCTCCAAAGTTCCTTCATCTGTAGTTTCTTCCGAAATGGCAAGCAATGCTTCCCCCACTCCAGAAGCCTCGTCGTCTTATGACTCGCAAAGAAAAGTGCCAGATTTTGACGAAATAACCATTTTTGATGATACTCagcctaaaataataaatttacaaataccAGACATTTCACAGTCTGTCGATGATGATTTGAACAAATCACATATTGTTAATTCGTCACCTGTAAACCTGGAACCCCTCAATACCATATCTGAAGATCAGATATTCACAGACGCTGCAACAGTTTGTAGTAATCCACCAGATTCAAATATTAATCCTGACATTGAGGAAACTATTACTAAAGATTCggaaaaaataaaatcacagcCGCTATCCTCAACGGTTGCAGATAAAGTAAATATACAATCTGTCATTGATCCATttgataaacatttaaaatatcctGTACTACAACCAAAAGagacaaacaaaaaacagaCTTCTGCCTATACTCCTAGTGCTATATCATCTAAAATTTGGAGAGAGTACCACGAAAAAAAAGATCAAGTTAAACTAGATAaagaaaaccaaataaagaaaagaaaaatggaGAGAGAAGCAAAGAAAGCTGAGCAAGTAATGAAAAAGAGAAAAGTGGAAAGGAGGAAGAAGAAGCCAAAAACagaaattgttaataaaataaaatgtggtGTCTGTCAAGAAGAACTTATAAGCGACACTGAAGATGAtgctgataaaaatataggttgcGATGATTGCATTAGATGGTATCATTTAAAATGCACAAAATTTAACGGCTTGTCTTATAATATTGTTGCTCAATCTgattataaatgtaatttttgccAAAGTGCAGATGAAGCAAGGCAAGCTGTTTTAGAGGAACATCAATAA
- Protein Sequence
- MEYSEEALREALKDIRDGKGIRETCRFYGIPRTTVQDRLSGRTAEKPRKVGPDPVLGFSGENKIVEWIIRSAKCGIAIKKVDLIDTVAAIAKDLKKGHCFAEGRPGQKWYQGFLKRHPQISIREPEAINKAREAIKEVNIRKWFSDLKAFLTERGFIDIMSDPDRILNGDETGVSLCPKTGKVLAPKGFKNLYVVKKGNEKETITVLITMTASGLICPPLVVYPYVRPPKAVIENTPSEWVIGKSETGWMRSDVFYEYIANDFNKWLIEKKIKKPVILFVDGHKSHMSMPLSHFCEENGIILYALPPNTTHILQPADVSVFRPLKQQWKTTVRNWQCKPENINKTITKTNFCSVFKETLDVNMTETIINGFRKCGLYPFNVEAVDFTKCVRDVQIQTAIPKKLDRNITDRHYQIAKDVILSISNNLAKRGIDAKVVDCEIEKARTTHKRPSKSKTPRNSSSKTPRNSLSKTPRCSSSETTRNSLTESSINQISNTPNINLHNRIIEIVDSSVPNIGSIVSLDELSIIPLDGTYSDINLDVFSEDITEIENNLNITVTADIHCEPALSSKVPSSVVSSEMASNASPTPEASSSYDSQRKVPDFDEITIFDDTQPKIINLQIPDISQSVDDDLNKSHIVNSSPVNLEPLNTISEDQIFTDAATVCSNPPDSNINPDIEETITKDSEKIKSQPLSSTVADKVNIQSVIDPFDKHLKYPVLQPKETNKKQTSAYTPSAISSKIWREYHEKKDQVKLDKENQIKKRKMEREAKKAEQVMKKRKVERRKKKPKTEIVNKIKCGVCQEELISDTEDDADKNIGCDDCIRWYHLKCTKFNGLSYNIVAQSDYKCNFCQSADEARQAVLEEHQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01332532; iTF_01332533; iTF_01332534; iTF_01332535; iTF_01332536; iTF_01332537;
- 90% Identity
- iTF_01332532; iTF_01332533; iTF_01332534; iTF_01332535; iTF_01332536; iTF_01332537;
- 80% Identity
- -