Scos016186.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- clz9
- Assembly
- GCA_905475405.1
- Location
- FR997835.1:6371503-6374430[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.5e-10 3.2e-07 31.2 0.0 1 35 15 49 15 54 0.93
Sequence Information
- Coding Sequence
- ATGCCGAAACCGTGCGCTggcaaaacatataaaaaacaatattctgAAGAAAATCTCACGGCAGCAGTCGCGGCAATTAATAATGGGATGCCCAAACGTGAAGCTGCTCGTAAATTCAATATTCCTAGAGCAACATTGCAGTTTAGGATTACTAACAACCTCATAAAAACACGTCCAGGTCCTTCAACAGTACTAACAGAAACTGAAGAAAATATACTTTCGGACTGGATAATCGCATCAAGTAAAAAAGGATTTCCTAGAAGGAAAGAGGAAGTCCTACATAGTGTGGAGCAATTCATGATTAAGACACCAAGACCGAGTAAATTTAAGGACAACAAACCTGGCGAAGGTTggtataaactttttttaaaaagacatccAAAAATCGCAGAACGAACTGCCGAAGCTGTCACCTCAGCAAGTGCTAACGTGTCAGAGGAAAATATTAGGAAATGGTTTAATCAAATAGAAAATAGTCTTACTAATGAAGAGCTCGAAATTCTAAATGATCCAAATAGGATATTTAATGGGGACGAGACAGGTTTTCAACTCTGCCCTAAACAGGGAAAAGTTTTGGCCGAAAAAGGCTCCAGGGATGTTTATGAAGTGGATATGGCACCAGCAAAATCAAGCATAACGGTTATGTTTACATTTTCGGCAAGTGGATCAGTAACACCACCTTTAGTGATATATCCACTAAAACGGATGCGCGCAGATTCAGTTCCCTCACATTGGGGAATATCACTGTCTGATAATGGGTGGATGACAAAGGAAATATTTCTGCAATACATGACGAACGTTTTATTCCCGCACCTTGTGAGTACCAATGTCAAATTTCCTGTGATTTTGTTTGTAGATGGCCATAAAAGTCATATGAATTATGAGCTCAGTGCAAAATGTAAAGAATTGGGTATAGTACTAATTTCACTATATCCAAATGCAACTAGAATTTTACAACCAGCTGACGTATCGGCTTTTAAACCAATAAAACATGAATGGAGGAAAGCTTTACTCGAATGGAGAAGACGCAATTTTTCCACTCAACTAACCAAAGTAGACTTTGGACGAGTCCTTACAACTGTAGTCggaaacataaaaaaagaagTTATAATAAATGGGTTTAGAGCTTGTGGATTACATCCTTGGAATCCTGACGCCATTAACTATGCCAAATGTCTTGGACAACAAACACAGACTGAATCGGTACCGAAACATGAAAAGAAACTGACAATGTCAGATTTTCAAAACCTTGTTGGACCAGATATTCTTTCTTGTCTTCGAAACAACGTTTCCAGTGAAGACAATCGTTTTTACAAAGCTTTAGACAACATTTACAAATATCTTACAGATGAGACTCTTTCTGACGATGTTTCTAATGATCAGAGGTGTATACATATTGGAGATGAATGGGTACCAATAGATGATGTCCCATTTGTAATAGTACCAAGCCATTCACTAGAAAGAGTTGAGGAAATTGACAACTATATGCCATCAGAGAAACAGTTTAAATGTTCAGCAGAAACAGCTCAGGTCGAAATATATGAAAACAAAACTGATACAAATACAAGtcaagataattttaaattaaaaaccagCAAAATTACAGAGgacgaaataaacaaaaaaaagaacaacaCTAAAGAAACTAAACACGTCACGGATTTAAAGAGATACAATTTGGAAAACAGAAACACCGACCTTCTGGAAACTGAAATGATTAAAGAGAATAACGTATACACAGAATACCAGGAAATTGACAGTGACTTACTACCAGTAAAAGTCAACacaacagttaaaataatagacaACATGCACATTATTAACGTAAGAACAGGCCATAAGAAAGTTATCGAGGAAGATAATAACATAAAGTTTGAAATTGATAGTACATTTCGGAATGAAGAGGTAGAGGAAAATAATGTGGAAAAATTCAAAGAGGATAATTTAGATAATATTAGTATCAAGACAATAGAAACTGAAAACACTGAAAAAGTACAACACAACGTGAAAAAATTAGAGCATATTCTCGAAAAACTTGATAACACCGACAGTATAATAGTACCTTCCGTAAAAATTGAAGATTTCCTTCATAAGGCCCCGACACCTAAGCGCAAAGGAAAAATCCTACCTAAAAAGTCTAATATCTACGTTCTGACTAGCGAAAAATGGCTCGAATCTGAAAAAGagaaacaaaatgaaaaagatAAAGCTTTAGCAGAAAAAGATGATCGAAAAAGAATTAAAGAACTTGCTAAACAAACTAAAGCACtaaaaaaggaagaaatgaaaaataataaaaataataaaagaacatgTAGCGATAAAAATGGAATTAAGGCTGACACTTGCAAAAAACGAAAAACagatgttaataaaaatacaaagaaagatAACGTAACAAAAGAGACTGAGAAACTCTTGAGTATGAAAGAACCAACGGTTattgataataacaatataaatgtaaatgaaacaaaagtaTTAATTGACCCAAAAAACATAGACGAAGTACAGAGTGAATACCAAAATGATTCTAAAGTAACCTTAGACACTTATAATACACAGAGTAaatataaacatgaaaaaaatgaGAGTAAAACTATAGTGATAAGTAAAGAGACTAATTATGCATTAAATAAACGTAAAGACTTATTATATAAAGAGACTGATAATATAACTACCAATGAAATGAAGACAAAGGCTGTTACTGAACCATTGATAAATACTGAAACGACTGAcacaaaaggtaaaataaatataatatcaattattcCCATTACAACTCATCCTAAAGTGAAACGAAGACTTTTTGATGAATCTTATACTGTTAAGCCAGACtttattttacctaaaatactcAACCGACGATGTTCATTTAGGAATGAACAGGAACTTCAAAATTACTTAGAACATAGTGACAGTCAGTAA
- Protein Sequence
- MPKPCAGKTYKKQYSEENLTAAVAAINNGMPKREAARKFNIPRATLQFRITNNLIKTRPGPSTVLTETEENILSDWIIASSKKGFPRRKEEVLHSVEQFMIKTPRPSKFKDNKPGEGWYKLFLKRHPKIAERTAEAVTSASANVSEENIRKWFNQIENSLTNEELEILNDPNRIFNGDETGFQLCPKQGKVLAEKGSRDVYEVDMAPAKSSITVMFTFSASGSVTPPLVIYPLKRMRADSVPSHWGISLSDNGWMTKEIFLQYMTNVLFPHLVSTNVKFPVILFVDGHKSHMNYELSAKCKELGIVLISLYPNATRILQPADVSAFKPIKHEWRKALLEWRRRNFSTQLTKVDFGRVLTTVVGNIKKEVIINGFRACGLHPWNPDAINYAKCLGQQTQTESVPKHEKKLTMSDFQNLVGPDILSCLRNNVSSEDNRFYKALDNIYKYLTDETLSDDVSNDQRCIHIGDEWVPIDDVPFVIVPSHSLERVEEIDNYMPSEKQFKCSAETAQVEIYENKTDTNTSQDNFKLKTSKITEDEINKKKNNTKETKHVTDLKRYNLENRNTDLLETEMIKENNVYTEYQEIDSDLLPVKVNTTVKIIDNMHIINVRTGHKKVIEEDNNIKFEIDSTFRNEEVEENNVEKFKEDNLDNISIKTIETENTEKVQHNVKKLEHILEKLDNTDSIIVPSVKIEDFLHKAPTPKRKGKILPKKSNIYVLTSEKWLESEKEKQNEKDKALAEKDDRKRIKELAKQTKALKKEEMKNNKNNKRTCSDKNGIKADTCKKRKTDVNKNTKKDNVTKETEKLLSMKEPTVIDNNNINVNETKVLIDPKNIDEVQSEYQNDSKVTLDTYNTQSKYKHEKNESKTIVISKETNYALNKRKDLLYKETDNITTNEMKTKAVTEPLINTETTDTKGKINIISIIPITTHPKVKRRLFDESYTVKPDFILPKILNRRCSFRNEQELQNYLEHSDSQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01332504;
- 90% Identity
- iTF_01332504; iTF_01332496;
- 80% Identity
- -