Scos035134.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- R1A1-element\ORF2
- Assembly
- GCA_905475405.1
- Location
- FR997848.1:13096445-13103951[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.9e-10 3e-07 31.3 0.0 3 39 564 599 562 605 0.89
Sequence Information
- Coding Sequence
- ATGCAATGTGCTTACCAACCGGGCAAATCGACAGAAACGGCGATTCACCTGGTAGTAGACAGAGCGGAAAAGGCAATTGAATGCAAAGAGATATGTCTAGCAGCATTTCTAGACATTGAGGGCGCCTTCGATAGAACATCATACGCAGCGATTGAAGAAGCGTCCGCAAGACATGGCATTGACCCAACCATCTGTGAATGGATAGGAAACATGCTGAACGGCAGAACGATGACAGCAGCGTTATTGGGAGAGGAGCTGACCATCACTGCCACCAAAGGATGCCCACAGGGGGGGGTACTATCACCGTTACTTTGGAATATGGTGGTGGACTCCCTTCTGGAGGAACTCAACAGCGGACCAGTCAGGACCGTAGGATATGCTGATGATCTGGTTATCCTGATTAACGGAATATTCCCGAAAACAGTAACTGAGATCATGAGGGAGATGCTTGGGAGGGTAGAGCGCTGGTGCGGAAGGCAACAGCTCTCGATCAACCCGAGTAAGACGGTAATAGTACCGTTCACAAGGAAGAGAAACATCAACAACTCAATAAATCTGAGTCTCTTCAACCAGGATCTAATGATCTCAGAGCAGGTAAAGTACCTAGGACTTATCTTAGACAACAAACTAACCTGGAAGCAGCACGTAGAGTCTGCAACAACAAAGGCACACAGAGTGTTCGGTATGTGCAGATCCACTTATGGTAGGACATGGGGGTTGAAACCCAAAGTCATGCTGTGGGTGTATACAATGATGGTCAGACCTATAGTGCTGTACGGAAGTCTGGCATGGTGGCCGAGGACAAACCTTGGCACATGCAGGGAGGAGCTATTAAAACTACAAAGGTTGGCCTGCGTTGCGATGACGGGTGCGTTTCGGACCACCCCAACCGCTGCAATGGAGGTCCTACTAAACCTAACACCACTGCACCTCGCGGTCCAGTCGGAGGCAGTAAGAGCACTCTACAGACTAGAAGGTCTTGGGCTATGGAACGACACCGGAAATAGCACAAGACACACAAAGCCGAAGTTATCTAGGCAAGTTGAAGATGCAATCAACATGTGCGGCGACCAGATGCCAACAAGTTACATCTTCGAAAGAAAATTCAAGATCATCATTCCAGAAAGATCTGAATGGTCAAAAGGACTCGAACCACCAGATGGTAAGGGTAAGATATGGTACACGGACGGATCAAAGATGAGCACGGGTACCGGAGCGGGTATTTATACCAAAGACTACGGCAGTAGCATAAGCATGGGTAAGTATGCGACAGTCTTCCAGGCAGAGACCTACGCGATTACAGCATGCGCACAAGGGAACATCGATAGTGGAGTGAACAacgaaactatctatattctcagCGACAGTCAAGCAGCACTCAAAGCCCTAACGGCACCAAGAGTCACCTCTAGGCTGGTCAAAAATGGTATCCAGGCCCTAAACAAGCTTGGCAGAACTAACAAGGTGAGACTGGTATGGATCCCAGGACACAAAGGTTACGTCGGCAACGAAAGagccgatgaacttgcaagggaAGAATCAAGCAGGAGTTTCGACGGACCGGAACCATGCGTAGGTCTTTCAAAAGGTACGTTCCTAATGGCCgtCGGTGAAAATAGCAGCATGAAGCCAAATTTTAAAcgaaataaggttttaaaaaaggTCGAAAAGAGGAAGAAATACGACTCCGAAAATTTACTTAAAGCCATAAATGCTGTTCAAAAGGGTATGAGCCGAAAGTTGGCAGCTAAAACGTATCAGGTACCACGTACTACTTTACTATATAGAATTAAAAACCCTGAACATAACTCACGTCCAGGACCATCTACCATATTGACTGAAGAGGAAGAAAAAAACCTGGAAGACTGGATTCACACCTGCTGCAAAAAGGGATTTCCAAAAAGAAAAGATGATGTTATCAGCAGTGTAGCACATTTTTTCAAGACAAAAAATAGAGTCAGCACTTTAAAAAATGGGGAAAAAtggtttaaattgtttttaggtCGTCATCCAAATATTTCTATTCGCACACCAGAAGCAGTCACGGCTGCGAGCGCAGCGGTGTCAGAAAATGATATAAGGGGGTGGTTTCAGCAAATTGAAGACTACCTTTCAGAAAGCAATTTGCTTCATGTCCTTTCTGATGCTTCTCGAGTTTTTAATGGGGACGAAACCAACTTTTTACTTAGCCCAAAAACAGGCGTAGTGCTAGCTCCAAAAGGTTGTAAAAACGTTTACGAAGTCGATAGTGCTCAGGCAAAAACCTCTTTAACTGTTATGTTTACATTTGGCGCTGATGGTTCTCTTACTCCGCCCATGGTTATTTTTCCCAATAAAAGACTCTCAGCTGACATATCATCTAAAGTACCACCAGATTGGGGGATAGGTTTAAGTGACAATGGATGGATGAAGTCAGAAATTTTCCATGACTACATAGAAAGCGTTTTATATCCTCACCTAATCAAAATAGGAACAGAGTTTCGAGTAATATTATTTGTGGATGGCCACAAAACCCACTTAACTTATTCTGTCAAGAATGTTTCTAAATTCATATCCATTGAAGAAAATGTACAGCCAGCTATCGAACAGTATGAAGAACCGCTTTTCCAGACAGATATCTCAAATATACCACTCATCGTTGATGATAACAGCCAATCCCAGAGTATATTTTGTCATTACACACCTGTTTCACATGAAGTCATAATCGAAAACATCATCGAATATGATCCTATAGAGACCGAGAATCATAACACAGATACAGACTATAATAGAGAATCTACCCATGACTGTTCACAGACAATTGAAGCTATTAGTATAACTCATAACGCTGAAGTATACGAACAAGTACCTGAAAAACAAAAAGCAACTATTGAAGTCCAGAAAATATTAGATAagaatgtaattattaaaaatatacaaaaagatTACGACAAAATTGAAATTCTGGAAAACATATCGAACCCTAACATACAAATTAGAACTATAGAATGTACTCCTGTTAAATTAAACGATGTTCTTGTGTTGCCAAAAACACCACAAAGAAAGGGGGccagaaatataaaaagagCTCCTTTTGTGCTAACATCTGCACAATGGAAAGCACAAGAGAATGAAAAGAATCGAatgaaagaagaaaaagaagagggcattaagaaaagaaaagaagagaGAGAAAAGAAAAAACTACAAGAAAAGCctaaaactaaaaaacaaaaaactgcaACAAAATTggaaaagaaagaaacaatttcGAAACGTAAATTTCTGCTGTCTGATAATTTTTATAACCTAGATGTGTCCTTAGAAAATATTGTGCATTGTAATGATTCCCAGGAAAATAATTTGCCTTTAGAAAATACTGATAGTAATAATTCCCTGGAAAATGATGTCAAGGAAAAACAAACTACCTCAAAGAAGAGAGCCcccaaaaaaaattacacagcTCAAGAAATAGAAAAAATGTTGACTGAATTTGAAGACTGA
- Protein Sequence
- MQCAYQPGKSTETAIHLVVDRAEKAIECKEICLAAFLDIEGAFDRTSYAAIEEASARHGIDPTICEWIGNMLNGRTMTAALLGEELTITATKGCPQGGVLSPLLWNMVVDSLLEELNSGPVRTVGYADDLVILINGIFPKTVTEIMREMLGRVERWCGRQQLSINPSKTVIVPFTRKRNINNSINLSLFNQDLMISEQVKYLGLILDNKLTWKQHVESATTKAHRVFGMCRSTYGRTWGLKPKVMLWVYTMMVRPIVLYGSLAWWPRTNLGTCREELLKLQRLACVAMTGAFRTTPTAAMEVLLNLTPLHLAVQSEAVRALYRLEGLGLWNDTGNSTRHTKPKLSRQVEDAINMCGDQMPTSYIFERKFKIIIPERSEWSKGLEPPDGKGKIWYTDGSKMSTGTGAGIYTKDYGSSISMGKYATVFQAETYAITACAQGNIDSGVNNETIYILSDSQAALKALTAPRVTSRLVKNGIQALNKLGRTNKVRLVWIPGHKGYVGNERADELAREESSRSFDGPEPCVGLSKGTFLMAVGENSSMKPNFKRNKVLKKVEKRKKYDSENLLKAINAVQKGMSRKLAAKTYQVPRTTLLYRIKNPEHNSRPGPSTILTEEEEKNLEDWIHTCCKKGFPKRKDDVISSVAHFFKTKNRVSTLKNGEKWFKLFLGRHPNISIRTPEAVTAASAAVSENDIRGWFQQIEDYLSESNLLHVLSDASRVFNGDETNFLLSPKTGVVLAPKGCKNVYEVDSAQAKTSLTVMFTFGADGSLTPPMVIFPNKRLSADISSKVPPDWGIGLSDNGWMKSEIFHDYIESVLYPHLIKIGTEFRVILFVDGHKTHLTYSVKNVSKFISIEENVQPAIEQYEEPLFQTDISNIPLIVDDNSQSQSIFCHYTPVSHEVIIENIIEYDPIETENHNTDTDYNRESTHDCSQTIEAISITHNAEVYEQVPEKQKATIEVQKILDKNVIIKNIQKDYDKIEILENISNPNIQIRTIECTPVKLNDVLVLPKTPQRKGARNIKRAPFVLTSAQWKAQENEKNRMKEEKEEGIKKRKEEREKKKLQEKPKTKKQKTATKLEKKETISKRKFLLSDNFYNLDVSLENIVHCNDSQENNLPLENTDSNNSLENDVKEKQTTSKKRAPKKNYTAQEIEKMLTEFED*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -