Scos024213.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997841.1:2857906-2870367[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-09 1.6e-06 29.0 0.1 17 44 1 28 1 29 0.94 2 2 6.5e-12 2.5e-09 38.0 0.1 4 44 102 142 99 143 0.91
Sequence Information
- Coding Sequence
- ATGTCAATACGACAAGCTGCAGCTAAGTATGGAATACCTAGATCTACAATCAGGAATCATATAAACAGCGGAAATATGGTTAAAAAGATGGGTAGAAACACCACATTCACTATAGAGCAAGAGAACGAATTAGCTAACAGAATTATGACATTATGTACAAAGGGTAAAAAAGTTACGGCGATTATGATTAGGAAACATGCATTTGAGTTTTGTGAAGAACATAATGTAAAGAATACTTTTAATAAAGCTGCAGcCCACGCTTGGCTTATTCCGAAAAGTACACGTGCTACTTGGTCGGAAAGAACCTTGGCAGCAGCAGTTAACGTCGTTCTTAATAAAGAAATGTCAGCATGGCAAGCTGCAGCTAAGTATGGAATACCTAGAACTACAATCAGGAATCATATAAGAAGCGGAAATTTAGTTAAAAGAATGGGAAGACACTCTACATTAACCAAAGAGCAAGAAAACGAATTAGCTAACAGAATAATGACATTATATACAAAGGGTCAAAAAGTTACGGCGATTATGATTAGGAAACTTGCATTTGAATTTTGTGAAGAACATAACGTAAAGAATACTTTTAATAAAGCTGCAGAGTGTTCTCTACCTGACACTTACCTTAAGAAATGGACAGAAAATACTTCGGCTGATTCGAAAATCCAGGATAACATTGATGGAAATGATTCCGCTATCACTCGAGTATTACCGTGTACTTTCTTCAACGCATCCGGGGATAATTTCGAGTTTATTGATAGTGCAAGCTCATCGCACGACAGACTGAGAGGAACAAAACGTCCATCAAAATTACAGGATCAGAGGAAATATAATGTTAATAGAGGTTTAGAATATATCGATAACAACGGAAGACAACATGGCAAAAGAATAATGAAATCTCCTTGCCCTGTAACTTGTCGGAAAAAATGTGGTGTAAAATTAACACAAGAAATGCGTCAAAGAATTTTTAATGAGTTCTGGAGTATTGGAGACCACTCAAAACAATGGAATTTCTTGGCACAGCACACAGTAAGGGTTGGCAAGAAAACTATTACTGTAGGTAGAGATAACACAAAACGTCTTCACACTATTCATTATTACCTACCAAGTTATATATCTCAAGAAGATAACAATGAAACTGCCAAAATATCAGTTTGCAAAACTATGTTCTTAAGTACCTTATCTATTAGTAAGGATTTTGTTTATACAGCTTTAGAAAAAGTTCGTAAAGGAAATGGATGTATTGAAACAGATCAGCGTGGTCGACATGGTAATCATAATAAACTTATCAATGAAGAGACTATTCGCAGTGTAATAGATCACATTAAAACGATTTCCTCTGTAGAAGATGCTCTCAGAAAATCAAagTCTTCTCCACCTGACACATACTGTAAAGGCACAGAAAATTCTTCCGATGATTCGGACATCCAGGATGACACTGATGAAAATTATTCTGCTATTACTCGAGTGTCATCACCGAGTGATTCCTTTACTGCATCCACTGATAATATCGAGTTCACTGACAGTGCGAGCACATCGTTTATTAACTTACGTCGTAAGAAAATTTATATTGCTAAAAAAGagtCGGAAGACGAAGAAAATACATCTGATTATTCGGACATCCAGAATAGCACCGCTTCAATCAGTTCTGCTATTGCTCGAGTGTTATCGCCGAGTAATTCTTTCAACCCATCCACTAATAGCACTGAGTTCATTGATAGTGCAAGCACAGCGTATAATAACTTACATCGTAAGCTAACTTCCATTACTAAAAAAGGTAAAGGCAGACAGAGTAAAGATCGTCAGagaaaatataatcttaatagAGGATTAGAATATGTCggtagaaacaaaaaaaaacatggtaAAAGAATTATGCAATCTCCTTGCCCTGTAACTTGTCGGAAAAAATGCAGCGAGAAATTAACTGAAGAAATGCGTCAAAGCATTTTTAATAAGTTCTGGAGTATTGGTGACCATTCTGTACAATGGGATTTCTTAGCAAAGCATACAGAAAGGACTCAGAAAAATCGGTTTACTGTTGGTAGAGATAACAACAAACGTCTTTACACTATTCATTATTACTTACCAAGCGATATATCTCAAGCAGATAATATTGAAACTACCAAAATATCGGTTTGCAAAGAAATGTTCTTAAGAACCTTTTCTATTAGTAAGGGTTTTGTTTTTACGGCTTTAGAAAAAGCCCATAAAGGAAATGGATTTATTGAAATAGATCAGCGTGGTCGACATGAGTCTCCTCCACCTgacatatattttaaagaagaaGACACACAAAGTTCTTCCGATGATTCGGACATCCAGGATAACACTGATAAAAATGATTCTGCTAGTACTCGAGTGTCATCACCGAGTAATTCTTTCAACGCATCCACTGATAATTTAGAGTTCATGGACAGTGCAAGCACATCGCATAATGACCTACGTCGTCGTAAGCTAATTTCCATTACTAAAAAGGGTAAAGGCAAAAAGAGTGAAAGCGAACGTCAGAGGAAATATAATCTTAATAGAGGATTACAATATGTCggtagaaacaaaataaaacatgcCAAAAGAATTATGCAATCTCCTTGCCCTGTAACTTGTCGGAAAAAATGCGGCGAGAAATTAACTGAAGAAATGCGTCAAAGCATTTTTAATAAGTTCTGGAGTATTGGTGACCATTCTGTACAATGGGATTTCTTAGCAAAGCTTACAcgaataccgcaagacaATATCGAGACATCGTTAACAGAAatatatgttaataatatatcTTTTGGTGAACCTAAAAAAACTGGTTGCAAGGAATGTCACATTTATCAAATGAAGCAACCAAGCCTAATCGTTTAA
- Protein Sequence
- MSIRQAAAKYGIPRSTIRNHINSGNMVKKMGRNTTFTIEQENELANRIMTLCTKGKKVTAIMIRKHAFEFCEEHNVKNTFNKAAAHAWLIPKSTRATWSERTLAAAVNVVLNKEMSAWQAAAKYGIPRTTIRNHIRSGNLVKRMGRHSTLTKEQENELANRIMTLYTKGQKVTAIMIRKLAFEFCEEHNVKNTFNKAAECSLPDTYLKKWTENTSADSKIQDNIDGNDSAITRVLPCTFFNASGDNFEFIDSASSSHDRLRGTKRPSKLQDQRKYNVNRGLEYIDNNGRQHGKRIMKSPCPVTCRKKCGVKLTQEMRQRIFNEFWSIGDHSKQWNFLAQHTVRVGKKTITVGRDNTKRLHTIHYYLPSYISQEDNNETAKISVCKTMFLSTLSISKDFVYTALEKVRKGNGCIETDQRGRHGNHNKLINEETIRSVIDHIKTISSVEDALRKSKSSPPDTYCKGTENSSDDSDIQDDTDENYSAITRVSSPSDSFTASTDNIEFTDSASTSFINLRRKKIYIAKKESEDEENTSDYSDIQNSTASISSAIARVLSPSNSFNPSTNSTEFIDSASTAYNNLHRKLTSITKKGKGRQSKDRQRKYNLNRGLEYVGRNKKKHGKRIMQSPCPVTCRKKCSEKLTEEMRQSIFNKFWSIGDHSVQWDFLAKHTERTQKNRFTVGRDNNKRLYTIHYYLPSDISQADNIETTKISVCKEMFLRTFSISKGFVFTALEKAHKGNGFIEIDQRGRHESPPPDIYFKEEDTQSSSDDSDIQDNTDKNDSASTRVSSPSNSFNASTDNLEFMDSASTSHNDLRRRKLISITKKGKGKKSESERQRKYNLNRGLQYVGRNKIKHAKRIMQSPCPVTCRKKCGEKLTEEMRQSIFNKFWSIGDHSVQWDFLAKLTRIPQDNIETSLTEIYVNNISFGEPKKTGCKECHIYQMKQPSLIV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -