Scos033006.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- Mblk-1
- Assembly
- GCA_905475405.1
- Location
- FR997847.1:11190135-11225545[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-11 2.6e-08 34.7 0.0 1 37 255 292 255 299 0.92 2 2 5.9e-18 2.3e-15 57.3 0.0 1 43 460 503 460 505 0.95
Sequence Information
- Coding Sequence
- ATGGGTCGAAGAAAATGGAAATTATATCAGGACGCATTAATACCAAAACGGGGGGAGGGAGAACGTTCAAGCGACGAGGAATCAGTTCACACAGACCCCCCTCCCGCCCTCAAGATAAAGACCATAGAGCAAATCAACGAGAACGAAGCAAAAGAGGGGTTAGAGGAGAAACCCCGACGACCAGAGACGATTCTGGAGTCGTTGATCAAGAGGCCGGCGACTCAGCCCAAGGTGGAGATCTCGGAAGAACCTTCGGATTGGAAGCCGCAGGACAAGTGCTACTTTTGTACAGATGGGGAGCCGGTGCCGGATGCAAGGGCGGGAGGTGCCACTAGTCCAGCATCGGAGTCAGACAGCAGTTCGGTGTCTGGTGCGAAGTCCCCTTCATCAGCGCCGCCGTTGTTGCAGCATCTGCTACAACTGCAGCAGGCACAGAACCCACAGACTATAGCTCAGTTCCAGCAGATGATAGCGGCTCTGGCGGCGTTGGGCAGCGGCCTGGTACCTCCACCACCACTCTCGCAAGCTTGGATGCTGCAAAGGATCTTACATAGACAGCAGACTGATCGGCTACCCGAAGTAGGAGAGAAggcaccatcatcatcatctcccAACCAAGCGGAGCAGCCTCTGGACCTCAGCAACAAGTCCACCTCCAGCACCAGCGGTACTCCGCCACCCGATACCAAACTCTTTGATAACAGATTGAAGCGGAGTGCTATCGAGTGCGCGGCGAGTAACAGTGGAGGTCGCCGAGCGTACACTGAGGAGGAACTGCTGTCGGCAGTCCGCGACATCCAGGCCGGGAGACTGGGCACCCGCCGCGCAGCGCTCCTCTACAACATCCCCCGCTCCACCCTGCGCAACAAACTCAACAAGTTCGGCGCCAACACCGAGAACGTCGACTCAGAACCAGACAGCGATGATCGACCCGACTCTCCCCCTTCAGTCATCTTAAAAATACCAACATTCCCCCCACCTGACGATAAAAGCCCTTCCCCAGCTGGAGTACCATTATCAGCAGGATCCATCGCACCAGTAACACCAGTCGTACCACAGCCGCAGCCACCGCTACTGATCCCACACTCAGTATTCGCTGATCCACCATCAACCCAACATCTCTTCACATCTCTCAGTGACGTCATCGCTAAGAGTATCAGCCAGAAGTTCCAACAACCGCTCGACCGGCCGCATCATCAGCCTGGGGACCTGCCCTTCATGCGAGCACCTGACCGTCACGTCTCAGTTATAAAGACCCCGCCAGACAACCAGCGCTACCCCGCACCCGGCAACTCGAAGGCCACCAGCAACAACAATGGACAGCCGGCCACGGGCGGTAAGGGCACGCGTCCAAAACGTGGCAAGTATCGCAACTACGACCGCGACAGTCTCGTGGAAGCTGTGAAAGCAGTTCAACGAGGTGAGATGTCCGTGCACAGAGCGGGCTCATACTACGGCGTACCTCACTCCACCCTCGAGTATAAAGTGAAGGAGCGCCACCTCATGCGGCCCAGGAAACGTGAGCCGAAACCACCGCAGGACACCAAGCCGCAACCACCGAAGCCGCAGCCGCCCAAGCCGCCGACTAAGCCGTTCTCTAACGGCATGAACGGACCCGACACCCCGGGCTACCCGGCCGGCTACCCGTTCTGGGGAGGCGGAGGTTTCGCTCCTCCCCCGGCACCTGATCTGTACGCATCGCACATGATGAGACGACTTCGTGAGGAAGCCCCGCCTCCCGCTAACGGATCGTTCCTGGAAGGCATCATTAGATCGAGCCTGGAGCGTCCCGCGCTGCTGCAGCGGCTGACGGGCGAGGCGCGCACGGCGGGCGAGGCGACCCCGGGGCTACTGCGGCGGCTGACGGGCGAGGACGAGCCGCCCGCGCGCCGCCAGCGCCTCGACAGCTCGGACCAGGCGCTCGCGGCGGAGATGCGCGAGGCGGTGCAGCGGCTGCGTGCCGACAAGCTGCGGCCGCGCAACGGCACGCCGACACCCCCGCCCGGCGCGGGGCTGCCTGGCACCGGGCCGCTGTGCGTGTCACCGGCGCCGGTGCCCCCCGCCGCGCCGCCCGACCGCGCCTAG
- Protein Sequence
- MGRRKWKLYQDALIPKRGEGERSSDEESVHTDPPPALKIKTIEQINENEAKEGLEEKPRRPETILESLIKRPATQPKVEISEEPSDWKPQDKCYFCTDGEPVPDARAGGATSPASESDSSSVSGAKSPSSAPPLLQHLLQLQQAQNPQTIAQFQQMIAALAALGSGLVPPPPLSQAWMLQRILHRQQTDRLPEVGEKAPSSSSPNQAEQPLDLSNKSTSSTSGTPPPDTKLFDNRLKRSAIECAASNSGGRRAYTEEELLSAVRDIQAGRLGTRRAALLYNIPRSTLRNKLNKFGANTENVDSEPDSDDRPDSPPSVILKIPTFPPPDDKSPSPAGVPLSAGSIAPVTPVVPQPQPPLLIPHSVFADPPSTQHLFTSLSDVIAKSISQKFQQPLDRPHHQPGDLPFMRAPDRHVSVIKTPPDNQRYPAPGNSKATSNNNGQPATGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPPQDTKPQPPKPQPPKPPTKPFSNGMNGPDTPGYPAGYPFWGGGGFAPPPAPDLYASHMMRRLREEAPPPANGSFLEGIIRSSLERPALLQRLTGEARTAGEATPGLLRRLTGEDEPPARRQRLDSSDQALAAEMREAVQRLRADKLRPRNGTPTPPPGAGLPGTGPLCVSPAPVPPAAPPDRA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00821701;
- 90% Identity
- iTF_01151993;
- 80% Identity
- -