Scos024212.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997841.1:2834521-2856091[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-10 4.9e-08 33.8 0.0 2 40 246 284 245 289 0.89 2 4 6.8e-11 2.6e-08 34.7 0.0 2 40 376 414 375 419 0.91 3 4 6.9e-12 2.6e-09 37.9 0.1 4 37 511 544 508 549 0.92 4 4 1.1e-13 4.1e-11 43.7 0.1 4 44 641 681 638 682 0.89
Sequence Information
- Coding Sequence
- ATGGAATTCATAGCGCGAATGAAACGTCGTCAGGATCTGCCTAGGAAAACTTACAAGGACTTCATTGGATTCCTGAAATGGCAAGTGCCTAGCACGGTGAAGAAATGTATGAATATAGACGAAGGAAAGCAGACTTATCTGGGTTATAAGAACATAATAATAAGTGGGAAGAACGCAGTCTTATTCGACGATCATACGTTTTCAAAACAAGCCGCTTCAGAGTACGTCGTGTATTGTTCAAGAAGAGTAAGATCTAAATaTTTTCAAAGAATAGTATCCGATGGAAGGAAGATTGCTTTATACAAAAAGTATACATATTCGAAACAAGGTAAATCTACTCGTACTGAGTATTGCTCCAAAAGAGCAACATTGAATTGTCGTGCTAAAATAACTTTCGATAAAGATGGGACTAAAGTTAGCGTAACTGGGGAACATAATCATCCACCACCGATATTAGTACGTACTCCTAAAGGACCATACGAGTGGATTTTATTAAATGGTCGCCCAGTACTCAGATACGGAGGTCACACGTACTCAAAAAGGGACAATGGCAAGAAACAATTAACCAATAAATTTTGTTGTTCTAAACGGATCACTGCAAAATGTCCGgctaaattaagtatattagaTAACGGATGTATAGAAGATAGTTCACCAGTACTTAAGATGTCAAGATTTGGAAGACCAGTGATAGAAATAGcTCAGTCTCCCAAAAAGAAGTATGCTAATTGGTCAGAAGGAAATTTAGCAACGGCAGTCGAAGCTATTCTCAACAATGAAATGCCAGTACGTAAAGCTGGCCTTATGTATGGAATTCCTGAAAGTACACTTAGGTACCATAAAGTTAGAGGAAAATTGGTTAAGAGGATTGGAAAAACCACCACGTTAACTAAAGAACAAGAAATCGAATTAGCTAACAGAATAATATTGTGTTATAATAACGGAGAAAAAGTTACGTCGATTATGATTAGGAGACATGCATTTGAATTTTGTGAAGAACATAATCTTCCAAATACCTTCAACAAAGAAGCACGTCTTGCTGGAAGAGATTGGTTGAGAATGTTTTTGAAAAGACATGTGCCTTTAAGAGCTCAGTCTCCCAAAAAGAAGTATGCTAATTGGTCAGAAGGAAATTTAGCAACGGCAGTCGAAGCTATTCTCAACAATGAAATGCCAATACGTAAAGCTGGACTTATGTATGGAATTCCTGAAAGTACTCTCAGGTACCATAAAGCGAGGGGAAAATTGGTTAAAAGGATTGGAAAAACCACCACATTAACTAAAGAACAAGAAATCGAATTAGCTAACAGAATAATATTGTGTTATAATAACGGAGAAAAAGTTACGTCGATTATGATTAGGAGACATGCATTTGAATTTTGTGAAGAACATAATCTTCCAAATACCTTCAACAAAGAAGCACGTCTTGCAGGAAGAGATTGGTTGAGAATGTTTTTGAAAAGACATGTGCCTTTAAGAGCCCACGCTTGGCTTATTCCGAAAACAAAACGTGCTCCTTGGTCAGAAAGAAGTTTAGCAGCTGCAGTTAACGCCGTTCTTAATAAAGAAATGCCACTTAGGAAAGCTTCAGCTAGGTATGGAATACCTAGAACTACTCTCAGAGAACATATACATTCTGGAAGTATAGTTAAAAAGATGGGAAGAAACAACACATTCACTAAAGAACAAGAAGTCGAATTCGTTGACAAAATAATGTCGTTATATTTAAATGGAGAAAAAGTTACGGCAATTATGATTAGGAAACATGCATTTGAATATGTTGAAGAGCGTAATCTTCGCAATACCTTTAGTAAAAAAACACGTCTTGCTGGAAGAATGTGGTTAGAAAAGTTTTTAAAGCGACAGATAGcCCACGCTTGGCTTATTCCGAAAAGAATACGTGCTACTTGGTCGGAAAGAAGCTTGGCAGCAGCAGTTAACGTCGTTCTTAATAAAGAAATGTCAACACGGCAAGCTGCAGCTAAGTATGGAATACCTAGAACTACAATCAGGAATCACATAAACAGCGGAAATTTAGTTAAAAGGATAGGAAAACAGTCTACATTAACTAAAGAACAAGAAAACGAATTAGCTAACATAATAATGACATTATATACAAAGGGTGAAAAAGTTACAGCGGTTATGATTAGGAAACATGCATTTGAATTTGTTGAAGAGCGTAATCTTCGCAATAGCTTTAGCAAAACAACACGTCTTGCTGGAAGAAAGTGGTTAGACAAGTTTTTAAAGAGACAGATAGGTTTGAGAGATATCTTAAAGTCTGTCTGA
- Protein Sequence
- MEFIARMKRRQDLPRKTYKDFIGFLKWQVPSTVKKCMNIDEGKQTYLGYKNIIISGKNAVLFDDHTFSKQAASEYVVYCSRRVRSKYFQRIVSDGRKIALYKKYTYSKQGKSTRTEYCSKRATLNCRAKITFDKDGTKVSVTGEHNHPPPILVRTPKGPYEWILLNGRPVLRYGGHTYSKRDNGKKQLTNKFCCSKRITAKCPAKLSILDNGCIEDSSPVLKMSRFGRPVIEIAQSPKKKYANWSEGNLATAVEAILNNEMPVRKAGLMYGIPESTLRYHKVRGKLVKRIGKTTTLTKEQEIELANRIILCYNNGEKVTSIMIRRHAFEFCEEHNLPNTFNKEARLAGRDWLRMFLKRHVPLRAQSPKKKYANWSEGNLATAVEAILNNEMPIRKAGLMYGIPESTLRYHKARGKLVKRIGKTTTLTKEQEIELANRIILCYNNGEKVTSIMIRRHAFEFCEEHNLPNTFNKEARLAGRDWLRMFLKRHVPLRAHAWLIPKTKRAPWSERSLAAAVNAVLNKEMPLRKASARYGIPRTTLREHIHSGSIVKKMGRNNTFTKEQEVEFVDKIMSLYLNGEKVTAIMIRKHAFEYVEERNLRNTFSKKTRLAGRMWLEKFLKRQIAHAWLIPKRIRATWSERSLAAAVNVVLNKEMSTRQAAAKYGIPRTTIRNHINSGNLVKRIGKQSTLTKEQENELANIIMTLYTKGEKVTAVMIRKHAFEFVEERNLRNSFSKTTRLAGRKWLDKFLKRQIGLRDILKSV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -