Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.4e-05 0.013 16.5 0.1 21 39 8 27 7 31 0.84

2 4 7.2e-11 2.7e-08 34.7 0.3 2 39 43 80 42 84 0.92

3 4 3.7e-14 1.4e-11 45.2 0.0 2 45 98 142 97 142 0.96

4 4 5.3e-18 2e-15 57.5 0.0 1 43 149 192 149 193 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.4e-05	0.013	16.5	0.1	21	39	8	27	7	31	0.84
2	4	7.2e-11	2.7e-08	34.7	0.3	2	39	43	80	42	84	0.92
3	4	3.7e-14	1.4e-11	45.2	0.0	2	45	98	142	97	142	0.96
4	4	5.3e-18	2e-15	57.5	0.0	1	43	149	192	149	193	0.96

Coding Sequence: ATGCAATTCAGCAATTCATATCACGCGTCAGCTGCTTACGGTATACCATCCACAACTCTTTGGCAACGAGCTCACAGGCTGGGCATAGATACTCCGAAGAAGGAAGGTGCGGCCAAATCCTGGAGTGAGGCAGATCTGCGCGGAGCTCTACATGCGCTTAGAGCGGGCGCTATATCTGCTAACAAGGCAAGCAAGGCTTATGGTATCCCCAGCAGCACGCTGTACAAGATAGCCCGTCGCGAAGGTATCCGTCTGTCGGCCCCGTTTAACGCGGCGCCCACGTCGTGGCGGCGCGCCGACCTGCAGCTCGCGCTCGCCTCCATACGCTGCGGCGCCAGCTCCGTGCAACGCGCTGCCACTACCTATGGGATACCTACTGGTACCCTATATGGTCGGTGTAAACGCGAAGGTATTGAGTTATCTCGGTCAAACCCCACGCCTTGGTCTGAAGATGCCATGGGAGAGGCCTTGGAAGCAGTCAGAGTTGGTCAGATGTCGATAAACCAAGCAGCGATACACTTCAACTTACCTTATTCTTCTCTGTACGGGAGGTTCAAGAGATGCAAGTATCAGTTGCAGGGTATTCCACAAAACCAACAGCATGTCCAAGACCTGCCCAAAACAGAAGTAGACACTCAGCCCCAGGAGGTTCACCCATACTACCACACTCATACAACGACCTCTCTTGACCACGAAACGCACACCTACACGAACCTGGAGTACCCACACATGCACGACCAGTATGGACAGTTCTACCACACCTTCAACAGCATCGCGACCAGCTGA
Protein Sequence: MQFSNSYHASAAYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALASIRCGASSVQRAATTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQLQGIPQNQQHVQDLPKTEVDTQPQEVHPYYHTHTTTSLDHETHTYTNLEYPHMHDQYGQFYHTFNSIATS*

Sequence clustering based on sequence similarity using MMseqs2