Scos029241.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- ct
- Assembly
- GCA_905475405.1
- Location
- FR997844.1:17145370-17176173[+]
Transcription Factor Domain
- TF Family
- CUT
- Domain
- Homeobox|CUT
- PFAM
- PF02376
- TF Group
- Helix-turn-helix
- Description
- The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.1e-27 7.1e-23 81.7 0.0 3 70 214 282 212 288 0.94 2 3 3.6e-32 8.2e-28 97.5 0.0 4 77 613 687 611 689 0.96 3 3 5.2e-31 1.2e-26 93.8 0.0 3 75 816 889 814 893 0.95
Sequence Information
- Coding Sequence
- ATGTGGGTTGTCATAATATGGCTTCGAAAAATTGCACAACTAGTAGAAGACGTTCGACGACTCCAAGCATCGCTTACAGCGCTGCAAGAAGCGCACGCTCAACAGTTACAGCGCTTAGAAGAACGGCTTGACGAGAAGAAACAACACATCGCGAGGCTAGAAGCTAGGCTTGACACTCAGAGGGACTATGATGATATTAAAAGAGAGATCAATATGCTCCGAGCGCTAGACTTGGGCGGTGGCGAGCGCTCGCTTGACAGGTCACTTGAGCGATCTCTCGAGCGGAAACCAGAGATTCGGTCTCCAAGTGCGGCGCCTACACTAAGGGACAGTTCCGCTGAGCGGGAACGAAGTACGGAGCGAAGAGACACAGGTGGTGAGGAGTGGCCGAGCACGCCCCCGCCGCTCAACAACAACACGACGCATCACAACAACAACGGGCCGACGCCGCTGCCGCTGCCTCCGCCGAGCCCCTTCCGCTTTGAGGAGCACCGCACGTACCGGTTCGCGGAGGACATGGGCCCGCTGCCACCCGGCGCGCTCGTCGGACGCCTCGGGGACTCCCTCATACCCAAGGGTGACCCCATGGAGGCGCGGCTGCAAGAGATGCTGAGATACAACATCGACAAATACGCGAACACGAACCTCGACACACTACACATCAGTCGAAGAGTGAGAGAACTACTCTCAGTACACAACATTGGTCAGAGACTGTTCGCCAAATATGTGTTAGGACTGTCACAAGGCACCGTGTCAGAATTGCTATCGAAGCCTAAGCCCTGGGACAAGCTGACGGAAAAAGGCAGAGATTCGTACAGAAAAATGCACGCGTGGGCCTGCGATGAGGCCGCCATCATGCTTCTCAAATCACTGATCCCTAAGAAAGTTGGGACAAAGGACGGCACAGGCTCCGTGTACGGCAGGCCTGATGAAGACAGTGACAGTCGCCTAACTCACGCAATTCTAAATGAAGCACACCTTATGAAGACCCCGACTGGTCAACCAAACAACGATGACTCTAGAAGCAACGAAGACTCCAGTTCACCGAGAACACAATGCCCGTCTCCGTTCTCTAATAAGgacaacagtcaaaataggAGGCTCAAGAAATACGAAAACGATGACATTCCTCAGGAGAAAGTGGCGCGTATTTACCAAGAGGAGTTGACAAAAATAATGACGAGAAGAGTTGAAGATATGCGCCGCGAAGGATTCCCTGGCATGTTTCCTCCTTTTTTCAGCGGCGGCATGCCACCACACATGGAGAGGCCGCCAGAAGATATCCGCATGGCATTAGAAGCTTACCACAGAGAACTAGCCAAGATCCAGCCCGCTGGAAACATTCCCAATTTACATAACTTGCCAGGAATGCCGCCTTTCCCCAACCTTCTTGCATTGCAACAGCAGGCAATGCAACAAGCACAGAACCAACAAATGAATGGATCTGGCGCGGTCCAAGATCTCTCTTTGCCTAAAGAAAAGAACGCCAAAATGAATGGAATGACTGATAGTGATAAGGATAGGCCAATGGATGCCGAAGAGGCTATAAGACATGCGGGAAGCGCATTCTCATTAGTAAGACCCAAACTAGAACCTGGACAGCAATCAACGGGGTCATCAGCTTCCAGCCCGCTTGGCAACTCAATACTGCCACCAGCAATAACGCCCAACGAGGACTTCAGCAGCTCAGCAGCAGCAAGTCCGCTGCAAAGAATGGCGTCGATTACAAATAGTCTTATCTCACAACCTTCAAACCCTCCACATCATCCACCTGTGCAGAGGTCCATGAAAGCAGTTCTACCACCGATTACTCAGCagcaatttgatttatttaacaatttgaATACCGAGGACATAGTGAGAAGAGTTAAAGAAGCTCTCAGTCAGTATTCAATCAGCCAAAGACTTTTCGGTGAATCCGTGCTCGGACTTTCACAAGGATCCGTCAGTGATTTACTCGCAAGGCCGAAGCCCTGGCATATGCTCACACAAAAAGGAAGAGAGCCGTTCATCCGTATGAAAATGTTCCTTGAGGATGACAACGCTGTTCACAAACTAGTGGCATCACAATACAAGATTGCGCCTGAGAAGTTGATGAGAACTGGAAACTACAGCGGAGCACCTCCCTGTCCGCCAAACATGAACAAACCCATGCCACCAACGCAGAAGATGATTTCAGACGCTACTTCGTTGCTGAGTAAAATGCAACAAGAACAACTGTTAGGAGCTGGTCATCTCGGTCACCTCGGCCAGCCCACGCCACTACTGCTGACACCGCCTGGCTTCCCGCCTCACCACGCGGTCACGTTGCCACCACAACATCACGATAACAATAACAAAGAGCGCAAACCACCACCGCCTCCCCAACCACATCATCAGCCTCCAGTCATGCGAAACCTTCATCAACACATATCACCGAGCGTCTATGAAATGGCTGCCCTCACTCAAGACTTAGATACGCAAACCATCACAACAAAAATTAAGGAAGCATTGCTAGCAAACAATATTGGACAAAAAATCTTCGGTGAAGCTGTTTTAGGACTCTCCCAAGGTTCAGTGAGCGAATTATTATCGAAACCAAAACCCTGGCATATGCTAAGTATCAAAGGTAGAGAACCATTCATTCGCATGCAGCTGTGGCTAAGCGATGCTCACAATATCGATCGTCTTCAAGCTTTGAAGAATGAAAGGCGAGAAGCGAGCAAACGGCGAAGGTCCAGTGGTCCTGGACAAGATAACTCCTCTGATACATCCTCAAATGATACATCAGAGTTCTACCACTCCAGTTCACCGGGACCTACTGCTGGAGCCCCATGCGCCAAGAAACAACGCGTGCTTTTTTCAGAAGAGCAGAAAGAAGCGCTCAGACTTGCCTTTGCTCTCGACCCTTATCCAAACATGCCAACAATTGAATTCCTGGCCGCAGAACTAGGTCTCTCATCAAGAACCATCACAAATTGGTTCCATAATCATCGAATGCGCTTAAAACAGCAAGCGCCACACGGCTTGCCGGCGGAACCTCCAGCAAGAGACCAATCTTCGGCACCATTCGATCCCGTTCAATTCCGTCTACTACTCAATCAGAGATTATTAGAGTTACAAAAAGAAAGAATGGGTCTAGCGGGAGTGCCGCTCCCCTACCCTCCTTACTTCGCGGCGAACTCTAACCTAGCCGCCCTGATCGGTCGCGGGCTCATCCCCCCCGACGAGCAGGTGAAGGACCAGTCCGGCGGACTCGACCTGTCCATGCCTCTCAAGCGAGAACCGGACGGCGACGACTTCGAGGACGACGACGTGGAAAGCAACCTCGGCTCCGAGGATTCGATGGACGAGGAGTCTAAGACTGAGCCGAAAGCGGCGTCTACCCCGGCCGGACGGTCGAGCCGACGGAAGCCTGCCGCTCCTCAGTGGGTGAACCCTGACTGGCAGGACGAGAAGCCGCGCAACCCTGACGAGGTGATAATCAACGGAGTCTGCGTCATGAGGAGCGATGACTTCCGGCGCGAGGCAGAGGAGACAGTGCGCATCGAGCCCTCCCCCGTCCCCCGCGAGGTGTCCCCACGCGAGACCTCCCCGCGCGCGTCCCCCGCGCCGCGCACGCCCCGCACCCCGCACACCCCGCTCACTCCCCACACGCCGCGACACACGCCTGATGACGTCATCCCCGAGGACAAGATCAAGGCGGAGACAGACGACGGCTGGGAGTACTAA
- Protein Sequence
- MWVVIIWLRKIAQLVEDVRRLQASLTALQEAHAQQLQRLEERLDEKKQHIARLEARLDTQRDYDDIKREINMLRALDLGGGERSLDRSLERSLERKPEIRSPSAAPTLRDSSAERERSTERRDTGGEEWPSTPPPLNNNTTHHNNNGPTPLPLPPPSPFRFEEHRTYRFAEDMGPLPPGALVGRLGDSLIPKGDPMEARLQEMLRYNIDKYANTNLDTLHISRRVRELLSVHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDEAAIMLLKSLIPKKVGTKDGTGSVYGRPDEDSDSRLTHAILNEAHLMKTPTGQPNNDDSRSNEDSSSPRTQCPSPFSNKDNSQNRRLKKYENDDIPQEKVARIYQEELTKIMTRRVEDMRREGFPGMFPPFFSGGMPPHMERPPEDIRMALEAYHRELAKIQPAGNIPNLHNLPGMPPFPNLLALQQQAMQQAQNQQMNGSGAVQDLSLPKEKNAKMNGMTDSDKDRPMDAEEAIRHAGSAFSLVRPKLEPGQQSTGSSASSPLGNSILPPAITPNEDFSSSAAASPLQRMASITNSLISQPSNPPHHPPVQRSMKAVLPPITQQQFDLFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGNYSGAPPCPPNMNKPMPPTQKMISDATSLLSKMQQEQLLGAGHLGHLGQPTPLLLTPPGFPPHHAVTLPPQHHDNNNKERKPPPPPQPHHQPPVMRNLHQHISPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNIDRLQALKNERREASKRRRSSGPGQDNSSDTSSNDTSEFYHSSSPGPTAGAPCAKKQRVLFSEEQKEALRLAFALDPYPNMPTIEFLAAELGLSSRTITNWFHNHRMRLKQQAPHGLPAEPPARDQSSAPFDPVQFRLLLNQRLLELQKERMGLAGVPLPYPPYFAANSNLAALIGRGLIPPDEQVKDQSGGLDLSMPLKREPDGDDFEDDDVESNLGSEDSMDEESKTEPKAASTPAGRSSRRKPAAPQWVNPDWQDEKPRNPDEVIINGVCVMRSDDFRREAEETVRIEPSPVPREVSPRETSPRASPAPRTPRTPHTPLTPHTPRHTPDDVIPEDKIKAETDDGWEY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01338275;
- 90% Identity
- iTF_00445005;
- 80% Identity
- iTF_01332440;